Evidence map›Paper›PMID 33420488›Full record

ArticleNature cell biology2021

Single-cell analysis reveals transcriptomic remodellings in distinct cell types that contribute to human prostate cancer progression.

Sujun Chen, Guanghui Zhu, Yue Yang, Fubo Wang, Yu-Tian Xiao, Na Zhang, Xiaojie Bian, Yasheng Zhu, Yongwei Yu, Fei Liu and 23 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature cell biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 345 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
345citing papers in PubMed, 1 pooled it
38.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

345 citing papers in PubMed, 1 synthesis or guideline pooled it, 511 citations in OpenAlex.

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  16. Advances in spatial omics for the analysis of prostate cancer.Analytical and bioanalytical chemistry · 2026
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285 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

33 authors at 11 institutions in 3 countries.

Sujun Chen *Department of Urology, Shanghai Changhai Hospital, Shanghai, P. R. China.
Guanghui Zhu *Department of Urology, Shanghai Changhai Hospital, Shanghai, P. R. China.ORCID http://orcid.org/0000-0003-1495-4238
Yue Yang *Department of Urology, Shanghai Changhai Hospital, Shanghai, P. R. China.
Fubo Wang *Department of Urology, Shanghai Changhai Hospital, Shanghai, P. R. China.ORCID http://orcid.org/0000-0002-2209-9932
Yu-Tian XiaoDepartment of Urology, Shanghai Changhai Hospital, Shanghai, P. R. China.ORCID http://orcid.org/0000-0002-3039-8342
Na ZhangEast China Normal University, Shanghai, P. R. China.
Xiaojie BianCancer Institute, Shanghai Urological Cancer Institute, Fudan University Shanghai Cancer Center, Fudan University, Shanghai, P. R. China.
Yasheng ZhuDepartment of Urology, Shanghai Changhai Hospital, Shanghai, P. R. China.
Yongwei YuDepartment of Urology, Shanghai Changhai Hospital, Shanghai, P. R. China.
Fei LiuDepartment of Urology, Cancer Hospital, Chinese Academy of Medical Sciences, Shanghai, P. R. China.
Keqin DongDepartment of Urology, Shanghai Changhai Hospital, Shanghai, P. R. China.
Javier MariscalDepartment of Surgery, Division of Cancer Biology and Therapeutics, Cedars-Sinai Medical Center, Los Angeles, CA, USA.ORCID http://orcid.org/0000-0002-8741-4956
Yin LiuDepartment of Laboratory Medicine, Shanghai Pulmonary Hospital, Tongji University School of Medicine, Shanghai, P. R. China.
Fraser SoaresPrincess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada.ORCID http://orcid.org/0000-0002-3977-7939
Helen Loo YauPrincess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada.
Bo ZhangNovel Bioinformatics Co., Ltd, Shanghai, P. R. China.
Weidong ChenNovel Bioinformatics Co., Ltd, Shanghai, P. R. China.
Chao WangNovel Bioinformatics Co., Ltd, Shanghai, P. R. China.
Dai ChenNovel Bioinformatics Co., Ltd, Shanghai, P. R. China.
Qinghua GuoNovel Bioinformatics Co., Ltd, Shanghai, P. R. China.
Zhengfang YiEast China Normal University, Shanghai, P. R. China.
Mingyao LiuEast China Normal University, Shanghai, P. R. China.
Michael FraserPrincess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada.
Daniel D De CarvalhoPrincess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada.ORCID http://orcid.org/0000-0002-8572-5259
Paul C BoutrosDepartment of Medical Biophysics, University of Toronto, Toronto, Ontario, Canada.ORCID http://orcid.org/0000-0003-0553-7520
Dolores Di VizioDepartment of Surgery, Division of Cancer Biology and Therapeutics, Cedars-Sinai Medical Center, Los Angeles, CA, USA.
Zhou JiangDepartment of Pathology, Renji Hospital, School of Medicine, Shanghai Jiaotong University, Shanghai, P. R. China.
Theodorus van der KwastPrincess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada.ORCID http://orcid.org/0000-0001-8640-5786
Alejandro BerlinPrincess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada.ORCID http://orcid.org/0000-0002-1880-6905
Song WuUrology Institute of Shenzhen University, The Third Affiliated Hospital of Shenzhen University, Shenzhen University, Shenzhen, P. R. China.
Jianhua WangCancer Institute, Shanghai Urological Cancer Institute, Fudan University Shanghai Cancer Center, Fudan University, Shanghai, P. R. China. jianhuaw2007@qq.com.ORCID http://orcid.org/0000-0003-0016-6505
Housheng Hansen HePrincess Margaret Cancer Centre, University Health Network, Toronto, Ontario, Canada. Hansenhe@uhnresearch.ca.ORCID http://orcid.org/0000-0003-2898-3363
Shancheng RenDepartment of Urology, Shanghai Changhai Hospital, Shanghai, P. R. China. renshancheng@gmail.com.ORCID http://orcid.org/0000-0001-9205-7888
Second Military Medical University · CNUniversity Health Network · CAEast China Normal University · CNCedars-Sinai Medical Center · USFudan University Shanghai Cancer Center · CNOntario Institute for Cancer Research · CARenji Hospital · CNShenzhen University · CNTongji University · CNUniversity of California, Los Angeles · USUniversity of Toronto · CA

Funding

Women's CancersP30CA016042 · NCI · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI Samuel Wheeler French · 1985 to 2026
$134.5M
Advancing method benchmarking and data sharing through crowd-sourced competitions in cancer researchU24CA248265 · NCI · SAGE BIONETWORKS · PI BOUTROS, PAUL CHRISTOPHER, VARMA, SUSHEEL · 2020 to 2024
$4.1M
Development of Protein Biomarkers in Post-DRE Urine for use in Liquid Biopsy of Prostate CancerU01CA214194 · NCI · EASTERN VIRGINIA MEDICAL SCHOOL · PI BOUTROS, PAUL CHRISTOPHER, KISLINGER, THOMAS · 2016 to 2021
$2.5M
CIHR 142246CIHR 152863CIHR 152864CIHR 159567NCI NIH HHS P30 CA016042NCI NIH HHS U01 CA214194NCI NIH HHS U24 CA248265
6 · The paper itself

Abstract

Prostate cancer shows remarkable clinical heterogeneity, which manifests in spatial and clonal genomic diversity. By contrast, the transcriptomic heterogeneity of prostate tumours is poorly understood. Here we have profiled the transcriptomes of 36,424 single cells from 13 prostate tumours and identified the epithelial cells underlying disease aggressiveness. The tumour microenvironment (TME) showed activation of multiple progression-associated transcriptomic programs. Notably, we observed promiscuous KLK3 expression and validated the ability of cancer cells in altering T-cell transcriptomes. Profiling of a primary tumour and two matched lymph nodes provided evidence that KLK3 ectopic expression is associated with micrometastases. Close cell-cell communication exists among cells. We identified an endothelial subset harbouring active communication (activated endothelial cells, aECs) with tumour cells. Together with sequencing of an additional 11 samples, we showed that aECs are enriched in castration-resistant prostate cancer and promote cancer cell invasion. Finally, we created a user-friendly web interface for users to explore the sequenced data.

Indexed as

Gene Expression Regulation, NeoplasticTranscriptomeTumor MicroenvironmentBiomarkers, TumorCell LineageCell SurvivalComputational BiologyDisease ProgressionEndothelial CellsEpithelial CellsFibroblastsHumansMaleProstatic NeoplasmsSingle-Cell AnalysisBiomarkers, Tumor

Identifiers

PMID33420488
OpenAlexW3120827191

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.