Evidence map›Paper›PMID 33420304›Full record

ArticleScientific reports2021

A bi-specific lectin from the mushroom Boletopsis grisea and its application in glycoanalytical workflows.

Mehul B Ganatra, Vladimir Potapov, Saulius Vainauskas, Anthony Z Francis, Colleen M McClung, Cristian I Ruse, Jennifer L Ong, Christopher H Taron

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Mehul B GanatraNew England Biolabs, Inc, 240 County Road, Ipswich, MA, 01938, USA.
Vladimir PotapovNew England Biolabs, Inc, 240 County Road, Ipswich, MA, 01938, USA.
Saulius VainauskasNew England Biolabs, Inc, 240 County Road, Ipswich, MA, 01938, USA.
Anthony Z FrancisNew England Biolabs, Inc, 240 County Road, Ipswich, MA, 01938, USA.
Colleen M McClungNew England Biolabs, Inc, 240 County Road, Ipswich, MA, 01938, USA.
Cristian I RuseNew England Biolabs, Inc, 240 County Road, Ipswich, MA, 01938, USA.
Jennifer L OngNew England Biolabs, Inc, 240 County Road, Ipswich, MA, 01938, USA.
Christopher H TaronNew England Biolabs, Inc, 240 County Road, Ipswich, MA, 01938, USA. taron@neb.com.
New England Biolabs (United States) · US

Funding

Protein-Glycan Interaction Resource of the CFGR24GM098791 · NIGMS · EMORY UNIVERSITY · PI CUMMINGS, RICHARD D, PAULSON, JAMES C · 2011 to 2013
$2.6M
NIGMS NIH HHS R24 GM098791
6 · The paper itself

Abstract

The BLL lectin from the edible Japanese "Kurokawa" mushroom (Boletopsis leucomelaena) was previously reported to bind to N-glycans harboring terminal N-acetylglucosamine (GlcNAc) and to induce apoptosis in a leukemia cell line. However, its gene has not been reported. In this study, we used a transcriptomics-based workflow to identify a full-length transcript of a BLL functional ortholog (termed BGL) from Boletopsis grisea, a close North American relative of B. leucomelaena. The deduced amino acid sequence of BGL was an obvious member of fungal fruit body lectin family (Pfam PF07367), a highly conserved group of mushroom lectins with a preference for binding O-glycans harboring the Thomsen-Friedenreich antigen (TF-antigen; Galβ1,3GalNAc-α-) and having two ligand binding sites. Functional characterization of recombinant BGL using glycan microarray analysis and surface plasmon resonance confirmed its ability to bind both the TF-antigen and β-GlcNAc-terminated N-glycans. Structure-guided mutagenesis of BGL's two ligand binding clefts showed that one site is responsible for binding TF-antigen structures associated with O-glycans, whereas the second site specifically recognizes N-glycans with terminal β-GlcNAc. Additionally, the two sites show no evidence of allosteric communication. Finally, mutant BGL proteins having single functional bindings site were used to enrich GlcNAc-capped N-glycans or mucin type O-glycopeptides from complex samples in glycomics and glycoproteomics analytical workflows.

Indexed as

AgaricalesAmino Acid SequenceBasidiomycotaBinding SitesFungal ProteinsHumansLectinsPolysaccharidesProtein BindingSequence AlignmentFungal ProteinsLectinsPolysaccharides

Identifiers

PMID33420304
PMCPMC7794217
OpenAlexW3119227449

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.