Evidence map›Paper›PMID 33420026›Full record

ArticleNature communications2021

Lossless integration of multiple electronic health records for identifying pleiotropy using summary statistics.

Ruowang Li, Rui Duan, Xinyuan Zhang, Thomas Lumley, Sarah Pendergrass, Christopher Bauer, Hakon Hakonarson, David S Carrell, Jordan W Smoller, Wei-Qi Wei and 9 more

Abstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Centralized and Federated Models for the Analysis of Clinical Data.Annual review of biomedical data science · 2024
    Review
  3. Article
  4. Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Ruowang LiDepartment of Biostatistics, Epidemiology & Informatics, University of Pennsylvania, Philadelphia, PA, USA.
Rui DuanDepartment of Biostatistics, Harvard T.H. Chan School of Public Health, Boston, MA, USA.ORCID 0000-0002-9261-4864
Xinyuan ZhangDepartment of Biostatistics, Epidemiology & Informatics, University of Pennsylvania, Philadelphia, PA, USA.
Thomas LumleyDepartment of Statistics, University of Auckland, Auckland, New Zealand.
Sarah PendergrassBiomedical and Translational Informatics Institute, Geisinger, Danville, PA, USA.
Christopher BauerBiomedical and Translational Informatics Institute, Geisinger, Danville, PA, USA.ORCID 0000-0002-4172-6719
Hakon HakonarsonCenter for Applied Genomics, Children's Hospital of Philadelphia, Philadelphia, PA, USA.ORCID 0000-0003-2814-7461
David S CarrellKaiser Permanente Washington Health Research Institute, Seattle, WA, USA.ORCID 0000-0002-8471-0928
Jordan W SmollerPsychiatric and Neurodevelopmental Genetics Unit, Center for Genomic Medicine, Massachusetts General Hospital, Boston, MA, USA.ORCID 0000-0002-0381-6334
Wei-Qi WeiDepartment of Biomedical Informatics, Vanderbilt University Medical Centre, Nashville, TN, USA.
Robert CarrollDepartment of Biomedical Informatics, Vanderbilt University Medical Centre, Nashville, TN, USA.
Digna R Velez EdwardsClinical and Translational Hereditary Cancer Program, Division of Genetic Medicine, Department of Medicine, Vanderbilt-Ingram Cancer Center, Vanderbilt University, Nashville, TN, USA.
Georgia WiesnerClinical and Translational Hereditary Cancer Program, Division of Genetic Medicine, Department of Medicine, Vanderbilt-Ingram Cancer Center, Vanderbilt University, Nashville, TN, USA.
Patrick SleimanCenter for Applied Genomics, Children's Hospital of Philadelphia, Philadelphia, PA, USA.
Josh C DennyDepartment of Biomedical Informatics, Vanderbilt University Medical Centre, Nashville, TN, USA.
Jonathan D MosleyDepartment of Biomedical Informatics, Vanderbilt University Medical Centre, Nashville, TN, USA.ORCID 0000-0001-6421-2887
Marylyn D RitchieDepartment of Genetics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, USA.ORCID 0000-0002-1208-1720
Yong ChenDepartment of Biostatistics, Epidemiology & Informatics, University of Pennsylvania, Philadelphia, PA, USA. ychen123@pennmedicine.upenn.edu.
Jason H MooreDepartment of Biostatistics, Epidemiology & Informatics, University of Pennsylvania, Philadelphia, PA, USA. jhmoore@upenn.edu.

Funding

Bioinformatics Strategies for Genome-Wide Association StudiesR01LM010098 · NLM · UNIVERSITY OF PENNSYLVANIA · PI MOORE, JASON H., WILLIAMS, SCOTT MATTHEW · 2009 to 2023
$5.1M
Dynamic learning for post-vaccine event prediction using temporal information in VAERSR01AI130460 · NIAID · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI CHEN, YONG, TAO, CUI · 2017 to 2021
$3.4M
Biomedical Computing and Informatics Strategies for Infectious Disease ResearchR01AI116794 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI MOORE, JASON H. · 2016 to 2020
$2.9M
A General Framework to Account for Outcome Reporting Bias in Systematic ReviewsR01LM012607 · NLM · UNIVERSITY OF PENNSYLVANIA · PI CHEN, YONG · 2017 to 2020
$1.4M
NIAID NIH HHS R01 AI116794NIAID NIH HHS R01 AI130460NLM NIH HHS R01 LM010098NLM NIH HHS R01 LM012607
6 · The paper itself

Abstract

Increasingly, clinical phenotypes with matched genetic data from bio-bank linked electronic health records (EHRs) have been used for pleiotropy analyses. Thus far, pleiotropy analysis using individual-level EHR data has been limited to data from one site. However, it is desirable to integrate EHR data from multiple sites to improve the detection power and generalizability of the results. Due to privacy concerns, individual-level patients' data are not easily shared across institutions. As a result, we introduce Sum-Share, a method designed to efficiently integrate EHR and genetic data from multiple sites to perform pleiotropy analysis. Sum-Share requires only summary-level data and one round of communication from each site, yet it produces identical test statistics compared with that of pooled individual-level data. Consequently, Sum-Share can achieve lossless integration of multiple datasets. Using real EHR data from eMERGE, Sum-Share is able to identify 1734 potential pleiotropic SNPs for five cardiovascular diseases.

Indexed as

Genetic PleiotropyCommunicationDatabases, FactualElectronic Health RecordsGenome-Wide Association StudyHumansModels, BiologicalPhenotypePolymorphism, Single NucleotidePrivacy

Identifiers

PMID33420026
PMCPMC7794298

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.