Evidence map›Paper›PMID 33417599›Full record

ArticlePLoS genetics2021

Identifying drug targets for neurological and psychiatric disease via genetics and the brain transcriptome.

Denis A Baird, Jimmy Z Liu, Jie Zheng, Solveig K Sieberts, Thanneer Perumal, Benjamin Elsworth, Tom G Richardson, Chia-Yen Chen, Minerva M Carrasquillo, Mariet Allen and 12 more

Abstract read
In one paragraph

Article in PLoS genetics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed, 3 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 3 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Article
  5. Precision medicine in mental health: applications, challenges, and recommendations.European psychiatry : the journal of the Association of European Psychiatrists · 2026
    Review
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  8. Review
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  11. Can classical statistics and deep learning converge on explainable, causally driven target discovery?DNA research : an international journal for rapid publication of reports on genes and genomes · 2025
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Denis A BairdMRC Integrative Epidemiology Unit (IEU), Population Health Sciences, University of Bristol, Bristol, United Kingdom.ORCID 0000-0003-4600-6013
Jimmy Z LiuTranslational Biology, Research and Development, Cambridge, Massachusetts, United States of America.ORCID 0000-0002-8379-5480
Jie ZhengMRC Integrative Epidemiology Unit (IEU), Population Health Sciences, University of Bristol, Bristol, United Kingdom.ORCID 0000-0002-6623-6839
Solveig K SiebertsSage Bionetworks, Seattle, Washington, United States of America.
Thanneer PerumalSage Bionetworks, Seattle, Washington, United States of America.ORCID 0000-0003-1168-8982
Benjamin ElsworthMRC Integrative Epidemiology Unit (IEU), Population Health Sciences, University of Bristol, Bristol, United Kingdom.ORCID 0000-0001-7328-4233
Tom G RichardsonMRC Integrative Epidemiology Unit (IEU), Population Health Sciences, University of Bristol, Bristol, United Kingdom.ORCID 0000-0002-7918-2040
Chia-Yen ChenTranslational Biology, Research and Development, Cambridge, Massachusetts, United States of America.ORCID 0000-0001-9548-5597
Minerva M CarrasquilloDepartment of Neuroscience, Mayo Clinic Florida, Jacksonville, Florida, United States of America.ORCID 0000-0002-3231-9134
Mariet AllenDepartment of Neuroscience, Mayo Clinic Florida, Jacksonville, Florida, United States of America.
Joseph S ReddyDepartment of Health Sciences Research, Mayo Clinic Florida, Jacksonville, Florida, United States of America.ORCID 0000-0002-1783-4453
Philip L De JagerCentre for Translational & Computational Neuroimmunology, Department of Neurology, Columbia University Medical Centre, New York, New York, United States of America.ORCID 0000-0002-8057-2505
Nilufer Ertekin-TanerDepartment of Neuroscience, Mayo Clinic Florida, Jacksonville, Florida, United States of America.ORCID 0000-0003-4436-8889
Lara M MangraviteSage Bionetworks, Seattle, Washington, United States of America.
Ben LogsdonSage Bionetworks, Seattle, Washington, United States of America.ORCID 0000-0002-0572-2569
Karol EstradaTranslational Biology, Research and Development, Cambridge, Massachusetts, United States of America.
Philip C HaycockMRC Integrative Epidemiology Unit (IEU), Population Health Sciences, University of Bristol, Bristol, United Kingdom.ORCID 0000-0001-5001-3350
Gibran HemaniMRC Integrative Epidemiology Unit (IEU), Population Health Sciences, University of Bristol, Bristol, United Kingdom.ORCID 0000-0003-0920-1055
Heiko RunzTranslational Biology, Research and Development, Cambridge, Massachusetts, United States of America.
George Davey SmithMRC Integrative Epidemiology Unit (IEU), Population Health Sciences, University of Bristol, Bristol, United Kingdom.ORCID 0000-0002-1407-8314
Tom R GauntMRC Integrative Epidemiology Unit (IEU), Population Health Sciences, University of Bristol, Bristol, United Kingdom.ORCID 0000-0003-0924-3247
AMP-AD eQTL working group

Funding

Integrating the exposome and methylome to inform brain molecular changes in ADRD across established diverse cohorts.U01AG046139 · NIA · UNIVERSITY OF FLORIDA · PI ERTEKIN-TANER, NILUFER, FUNK, CORY · 2013 to 2022
$24.6M
Integrative translational discovery of vascular risk factors in aging and dementiaRF1AG051504 · NIA · MAYO CLINIC JACKSONVILLE · PI BU, GUOJUN, ERTEKIN-TANER, NILUFER · 2015 to 2019
$9.8M
Harnessing Molecular Networks of Resilience for Therapeutic Discoveries in ADR01AG061796 · NIA · MAYO CLINIC JACKSONVILLE · PI ERTEKIN-TANER, NILUFER · 2018 to 2022
$5.7M
Cancer Research UK C18281/A19169Department of HealthMedical Research Council MC_UU_00011/1Medical Research Council MC_UU_00011/4Medical Research Council MR/S003886/1NIA NIH HHS R01 AG061796NIA NIH HHS RF1 AG051504NIA NIH HHS U01 AG046139Wellcome TrustWellcome Trust 208806/Z/17/Z
6 · The paper itself

Abstract

Discovering drugs that efficiently treat brain diseases has been challenging. Genetic variants that modulate the expression of potential drug targets can be utilized to assess the efficacy of therapeutic interventions. We therefore employed Mendelian Randomization (MR) on gene expression measured in brain tissue to identify drug targets involved in neurological and psychiatric diseases. We conducted a two-sample MR using cis-acting brain-derived expression quantitative trait loci (eQTLs) from the Accelerating Medicines Partnership for Alzheimer's Disease consortium (AMP-AD) and the CommonMind Consortium (CMC) meta-analysis study (n = 1,286) as genetic instruments to predict the effects of 7,137 genes on 12 neurological and psychiatric disorders. We conducted Bayesian colocalization analysis on the top MR findings (using P<6x10-7 as evidence threshold, Bonferroni-corrected for 80,557 MR tests) to confirm sharing of the same causal variants between gene expression and trait in each genomic region. We then intersected the colocalized genes with known monogenic disease genes recorded in Online Mendelian Inheritance in Man (OMIM) and with genes annotated as drug targets in the Open Targets platform to identify promising drug targets. 80 eQTLs showed MR evidence of a causal effect, from which we prioritised 47 genes based on colocalization with the trait. We causally linked the expression of 23 genes with schizophrenia and a single gene each with anorexia, bipolar disorder and major depressive disorder within the psychiatric diseases and 9 genes with Alzheimer's disease, 6 genes with Parkinson's disease, 4 genes with multiple sclerosis and two genes with amyotrophic lateral sclerosis within the neurological diseases we tested. From these we identified five genes (ACE, GPNMB, KCNQ5, RERE and SUOX) as attractive drug targets that may warrant follow-up in functional studies and clinical trials, demonstrating the value of this study design for discovering drug targets in neuropsychiatric diseases.

Indexed as

Drug DiscoveryGenetic Predisposition to DiseaseAlzheimer DiseaseBipolar DisorderBrainGenome-Wide Association StudyHumansMendelian Randomization AnalysisMolecular Targeted TherapyNervous System DiseasesPolymorphism, Single NucleotideQuantitative Trait LociSchizophreniaTranscriptome

Identifiers

PMID33417599
PMCPMC7819609

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.