Evidence map›Paper›PMID 33414541›Full record

ArticleBritish journal of cancer2021

Multi-protein spatial signatures in ductal carcinoma in situ (DCIS) of breast.

Sunil S Badve, Sanghee Cho, Yesim Gökmen-Polar, Yunxia Sui, Chrystal Chadwick, Elizabeth McDonough, Anup Sood, Marian Taylor, Maria Zavodszky, Puay Hoon Tan and 3 more

Abstract read
In one paragraph

Article in British journal of cancer, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Sunil S BadveDepartment of Pathology and Laboratory Medicine, Indiana University School of Medicine, Indianapolis, IN, 46202, USA. sbadve@iupui.edu.ORCID http://orcid.org/0000-0001-8861-9980
Sanghee ChoGE Research, Niskayuna, NY, 12309, USA.
Yesim Gökmen-PolarDepartment of Pathology and Laboratory Medicine, Indiana University School of Medicine, Indianapolis, IN, 46202, USA.
Yunxia SuiGE Research, Niskayuna, NY, 12309, USA.
Chrystal ChadwickGE Research, Niskayuna, NY, 12309, USA.
Elizabeth McDonoughGE Research, Niskayuna, NY, 12309, USA.
Anup SoodGE Research, Niskayuna, NY, 12309, USA.
Marian TaylorDepartment of Oncology, Cancer and Haematology Centre, Oxford University, Oxford, OX37LJ, UK.
Maria ZavodszkyGE Research, Niskayuna, NY, 12309, USA.
Puay Hoon TanDepartment of Pathology, Singapore General Hospital, Singapore, Singapore.
Michael GerdesGE Research, Niskayuna, NY, 12309, USA.
Adrian L HarrisDepartment of Oncology, Cancer and Haematology Centre, Oxford University, Oxford, OX37LJ, UK.ORCID http://orcid.org/0000-0003-1376-8409
Fiona GintyGE Research, Niskayuna, NY, 12309, USA.

Funding

(PQC3) Ethnicity-determined immune response and DCIS outcomeR01CA194600 · NCI · INDIANA UNIVERSITY INDIANAPOLIS · PI BADVE, SUNIL S., GINTY, FIONA · 2015 to 2019
$2.7M
Cancer Research UK 18974NCI NIH HHS R01 CA194600
6 · The paper itself

Abstract

backgroundThere is limited knowledge about DCIS cellular composition and relationship with breast cancer events (BCE).

methodsImmunofluorescence multiplexing (MxIF) was used to image and quantify 32 cellular biomarkers in FFPE DCIS tissue microarrays. Over 75,000 DCIS cells from 51 patients (median 9 years follow-up for non-BCE cases) were analysed for profiles predictive of BCE. K-means clustering was used to evaluate cellular co-expression of epithelial markers with ER and HER2.

resultsOnly ER, PR and HER2 significantly correlated with BCE. Cluster analysis identified 6 distinct cell groups with different levels of ER, Her2, cMET and SLC7A5. Clusters 1 and 3 were not significant. Clusters 2 and 4 (high ER/low HER2 and SLC7A5/mixed cMET) significantly correlated with low BCE risk (P = 0.001 and P = 0.034), while cluster 6 (high HER2/low ER, cMET and SLC7A5) correlated with increased risk (P = 0.018). Cluster 5 (similar to cluster 6, except high SLC7A5) trended towards significance (P = 0.072). A continuous expression score (Escore) based on these 4 clusters predicted likelihood of BCE (AUC = 0.79, log-rank test P = 5E-05; LOOCV AUC = 0.74, log-rank test P = 0.006).

conclusionMultiplexed spatial analysis of limited tissue is a novel method for biomarker analysis and predicting BCEs. Further validation of Escore is needed in a larger cohort.

Indexed as

AgedAntineoplastic Combined Chemotherapy ProtocolsBiomarkers, TumorBreast NeoplasmsCarcinoma, Ductal, BreastCarcinoma, Intraductal, NoninfiltratingCombined Modality TherapyFemaleFollow-Up StudiesHumansMastectomyMiddle AgedPrognosisRetrospective StudiesSurvival RateBiomarkers, Tumor

Identifiers

PMID33414541
PMCPMC7961015

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.