Evidence map›Paper›PMID 33414181›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2021

Ataluren and aminoglycosides stimulate read-through of nonsense codons by orthogonal mechanisms.

Martin Y Ng, Hong Li, Mikel D Ghelfi, Yale E Goldman, Barry S Cooperman

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
3.7field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 57 citations in OpenAlex.

  1. Pharmacological readthrough and base editing forMolecular therapy. Nucleic acids · 2026
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  10. Molecular treatment options for patients carryingMolecular therapy. Nucleic acids · 2025
    Article
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  15. Cystic Fibrosis: A Journey through Time and Hope.International journal of molecular sciences · 2024
    Review
  16. Single-Molecule Studies of Cognate and Near-Cognate Elongation in anbioRxiv : the preprint server for biology · 2024
    Article
  17. Base editing in humanized dystrophic mice.Molecular therapy. Nucleic acids · 2024
    Article
  18. Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Martin Y NgDepartment of Chemistry, University of Pennsylvania, Philadelphia, PA 19104.ORCID 0000-0001-5601-8857
Hong LiDepartment of Chemistry, University of Pennsylvania, Philadelphia, PA 19104.ORCID 0000-0002-8259-1961
Mikel D GhelfiDepartment of Chemistry, University of Pennsylvania, Philadelphia, PA 19104.
Yale E GoldmanDepartment of Physiology, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104.ORCID 0000-0002-2492-9194
Barry S CoopermanDepartment of Chemistry, University of Pennsylvania, Philadelphia, PA 19104; cooprman@sas.upenn.edu.
University of Pennsylvania · US

Funding

Supplemental Application linked to parent grant Structural Dynamics of Molecular Motors, the Cytoskeleton, and the RibosomeR35GM118139 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI YALE E GOLDMAN · 2016 to 2026
$8.3M
Mechanisms of Induced Nonsense Suppression and MisreadingR01GM127374 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI BARRY S. COOPERMAN · 2018 to 2026
$2.3M
NIGMS NIH HHS R01 GM127374NIGMS NIH HHS R35 GM118139
6 · The paper itself

Abstract

During protein synthesis, nonsense mutations, resulting in premature stop codons (PSCs), produce truncated, inactive protein products. Such defective gene products give rise to many diseases, including cystic fibrosis, Duchenne muscular dystrophy (DMD), and some cancers. Small molecule nonsense suppressors, known as TRIDs (translational read-through-inducing drugs), stimulate stop codon read-through. The best characterized TRIDs are ataluren, which has been approved by the European Medicines Agency for the treatment of DMD, and G418, a structurally dissimilar aminoglycoside. Previously [1], we applied a highly purified in vitro eukaryotic translation system to demonstrate that both aminoglycosides like G418 and more hydrophobic molecules like ataluren stimulate read-through by direct interaction with the cell's protein synthesis machinery. Our results suggested that they might do so by different mechanisms. Here, we pursue this suggestion through a more-detailed investigation of ataluren and G418 effects on read-through. We find that ataluren stimulation of read-through derives exclusively from its ability to inhibit release factor activity. In contrast, G418 increases functional near-cognate tRNA mispairing with a PSC, resulting from binding to its tight site on the ribosome, with little if any effect on release factor activity. The low toxicity of ataluren suggests that development of new TRIDs exclusively directed toward inhibiting termination should be a priority in combatting PSC diseases. Our results also provide rate measurements of some of the elementary steps during the eukaryotic translation elongation cycle, allowing us to determine how these rates are modified when cognate tRNA is replaced by near-cognate tRNA ± TRIDs.

Indexed as

AminoglycosidesAnimalsArtemiaCodon, NonsenseCodon, TerminatorCystic FibrosisMuscular Dystrophy, DuchenneOxadiazolesPeptide Chain Elongation, TranslationalProtein BiosynthesisProtein Synthesis InhibitorsRibosomesRNA, TransferSaccharomycesAminoglycosidesatalurenCodon, NonsenseCodon, TerminatorOxadiazolesProtein Synthesis InhibitorsRNA, TransferatalurenG418nonsense suppressionread-throughTRID

Identifiers

PMID33414181
PMCPMC7812769
OpenAlexW3119996912

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.