Evidence map›Paper›PMID 33413260›Full record

ArticleBMC surgery2021

Identification of population of bacteria from culture negative surgical site infection patients using molecular tool.

Himanshu Sekhar Behera, Nirupama Chayani, Madhusmita Bal, Hemant Kumar Khuntia, Sanghamitra Pati, Sashibhusan Das, Manoranjan Ranjit

Open access · goldAbstract read
In one paragraph

Article in BMC surgery, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Pathogens (Basel, Switzerland) · 2024
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Himanshu Sekhar BeheraICMR-Regional Medical Research Centre, Bhubaneswar, 751023, Odisha, India. himansubt@gmail.com.ORCID http://orcid.org/0000-0003-4638-2836
Nirupama ChayaniDepartment of Microbiology, SCB Medical College and Hospital, Cuttack, 753003, India.
Madhusmita BalDepartment of Parasite Immunology, ICMR-Regional Medical Research Centre, Bhubaneswar, 751023, India.
Hemant Kumar KhuntiaDepartment of Molecular Epidemiology, ICMR-Regional Medical Research Centre, Bhubaneswar, 751023, India.
Sanghamitra PatiDepartment of Public Health, ICMR-Regional Medical Research Centre, Bhubaneswar, India.
Sashibhusan DasDepartment of Molecular Epidemiology, ICMR-Regional Medical Research Centre, Bhubaneswar, 751023, India.
Manoranjan RanjitICMR-Regional Medical Research Centre, Bhubaneswar, 751023, Odisha, India. ranjit62@gmail.com.
Regional Medical Research Centre · INRegional Medical Research Centre · INSriram Chandra Bhanja Medical College Hospital · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundManaging surgical site infections, with negative culture report in routine diagnosis is a common dilemma in microbiology accounting more than 30% worldwide. The present study attempted to identify the presence of bacterial spp. if any in wound aspirates/swabs of culture negative surgical site infections of hospitalised patients using molecular tools.

methodsNinety-seven patients with post-operative SSI whose wound swabs/aspirate were negative in the conventional aerobic culture after 72 h of incubation were analysed by 16S rRNA gene specific broad range PCR. The amplified DNA fragments were sequenced by Sanger DNA sequencing method and homology of the sequence were matched using NCBI BLAST (NCBI, USA)

resultsOf the 97 patients, 16S rRNA based broad range PCR assay could identify the presence of bacterial pathogen in 53(54.63%) cases, of which 29 isolates were supposed to be of viable but non-culturable bacteria (VBNC), 07 were of obligatory anaerobes and 13 were of unculturable bacteria, 04 were with poly bacterial infections.

conclusionsOur study highlights the usefulness of PCR assay in detecting the presence of any VBNC, anaerobes and unculturable bacteria in SSI patients regardless of how well the bacteria may or may not grow in culture. Measures should be taken to use anaerobic culture system and PCR diagnosis along with conventional culture to detect the VBNC and unculturable bacteria where Gram stain is positive for better patient care.

Indexed as

BacteriaDNA, BacterialHumansPolymerase Chain ReactionRNA, Ribosomal, 16SSequence Analysis, DNASurgical Wound InfectionDNA, BacterialRNA, Ribosomal, 16SAnaerobic bacteriaBroad-range 16S rRNA gene PCR for SSICulture negative surgical site infectionsPCR assay in SSISurgical site infectionsUnculturable bacteria

Identifiers

PMID33413260
PMCPMC7788737
OpenAlexW3120872941

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.