ArticleBMC plant biology2021
Comparative plastid genomics of four Pilea (Urticaceae) species: insight into interspecific plastid genome diversity in Pilea.
Article in BMC plant biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.
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37 citing papers in PubMed, 39 citations in OpenAlex.
- Plastid Phylogenomics of Elatostemateae (Urticaceae): Insights Into Structural Variation and Phylogenetic Relationships.Ecology and evolution · 2026Article
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- Comparative chloroplast genomics reveals codon usage bias, simple sequence repeat dynamics, and phylogenomic relationships in Urticaceae.Frontiers in plant science · 2026Article
- Insights into the plastome evolution and phylogenetic relationships of Lepidium (Brassicaceae).BMC plant biology · 2025Article
- Comparative Analysis of Chloroplast Genome Between Widely Distributed and Locally DistributedInternational journal of molecular sciences · 2025Article
- Glycyrrhiza plastid paternal inheritance and a new DNA barcode provide new strategies for molecular identification of three medicinal licorice hybrid complexes.BMC plant biology · 2025Article
- Complete chloroplast genome of two Brachycorythis (Orchidaceae) species from China: comparative analysis and phylogenetic implications.BMC genomics · 2025Article
- Comparative plastome analyses and phylogenetic insights of Elatostema.BMC plant biology · 2025Article
- The First Complete Chloroplast Genome of Spider Flower (International journal of molecular sciences · 2025Article
- An integrative approach clarifies species delimitation and biogeographic history ofPlant diversity · 2025Article
- The complete chloroplast genome and phylogenetic analysis ofMitochondrial DNA. Part B, Resources · 2025Article
- Chloroplast mini-barcodes combined with high resolution melting analysis to identify herbal medicine Difengpi (Heliyon · 2024Article
- The complete Chloroplast genome of Stachys geobombycis and comparative analysis with related Stachys species.Scientific reports · 2024Article
- Plastid genome data provide new insights into the dynamic evolution of the tribe Ampelopsideae (Vitaceae).BMC genomics · 2024Article
- Chloroplast Genome Provides Insights into Molecular Evolution and Species Relationship of Fleabanes (Plants (Basel, Switzerland) · 2024Article
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- The complete chloroplast genome ofMitochondrial DNA. Part B, Resources · 2024Article
- The complete chloroplast genome ofMitochondrial DNA. Part B, Resources · 2024Article
- Chloroplast genome ofMitochondrial DNA. Part B, Resources · 2024Article
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6 authors at 2 institutions in 1 country.
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Abstract
backgroundPilea is a genus of perennial herbs from the family Urticaceae, and some species are used as courtyard ornamentals or for medicinal purposes. At present, there is no information about the plastid genome of Pilea, which limits our understanding of this genus. Here, we report 4 plastid genomes of Pilea taxa (Pilea mollis, Pilea glauca 'Greizy', Pilea peperomioides and Pilea serpyllacea 'Globosa') and performed comprehensive comparative analysis.
resultsThe four plastid genomes all have a typical quartile structure. The lengths of the plastid genomes ranged from 150,398 bp to 152,327 bp, and each genome contained 113 unique genes, including 79 protein-coding genes, 4 rRNA genes, and 30 tRNA genes. Comparative analysis showed a rather high level of sequence divergence in the four genomes. Moreover, eight hypervariable regions were identified (petN-psbM, psbZ-trnG-GCC, trnT-UGU-trnL-UAA, accD-psbI, ndhF-rpl32, rpl32-trnL-UAG, ndhA-intron and ycf1), which are proposed for use as DNA barcode regions. Phylogenetic relationships based on the plastid genomes of 23 species of 14 genera of Urticaceae resulted in the placement of Pilea in the middle and lower part of the phylogenetic tree, with 100% bootstrap support within Urticaceae.
conclusionOur results enrich the resources concerning plastid genomes. Comparative plastome analysis provides insight into the interspecific diversity of the plastid genome of Pilea. The identified hypervariable regions could be used for developing molecular markers applicable in various research areas.
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