Evidence map›Paper›PMID 33413126›Full record

ArticleBMC microbiology2021

Leptospira in river and soil in a highly endemic area of Ecuador.

Erin Miller, Veronica Barragan, Jorge Chiriboga, Chad Weddell, Ligia Luna, Dulce J Jiménez, John Aleman, Joseph R Mihaljevic, Sonora Olivas, Jane Marks and 6 more

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
4.3field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
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  4. Backyard Livestock Guinea Pigs Are Reservoirs forTropical medicine and infectious disease · 2025
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  6. High prevalence and diversity ofOne health (Amsterdam, Netherlands) · 2025
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  7. Article
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  9. Risk of human leptospirosis in Colombia: spatiotemporal analysis and related hydroclimatic factors.Transactions of the Royal Society of Tropical Medicine and Hygiene · 2024
    Article
  10. Article
  11. Are PathogenicTropical medicine and infectious disease · 2024
    Article
  12. Review
  13. Epidemiology ofMicroorganisms · 2023
    Article
  14. Article
  15. Review
  16. Leptospirosis in Ecuador: Current Status and Future Prospects.Tropical medicine and infectious disease · 2023
    Review
  17. Article
  18. Article
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 3 institutions in 2 countries.

Erin MillerThe Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA.
Veronica BarraganThe Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA. vbarragan@usfq.edu.ec.
Jorge ChiribogaUniversidad San Francisco de Quito, Colegio de Ciencias Biologicas y Ambientales, Instituto de Microbiologia, Quito, Ecuador.
Chad WeddellCollege of Public Health, University of South Florida, Tampa, FL, USA.
Ligia LunaUniversidad San Francisco de Quito, Colegio de Ciencias Biologicas y Ambientales, Instituto de Microbiologia, Quito, Ecuador.
Dulce J JiménezDepartment of Biological Sciences, Northern Arizona University, Flagstaff, AZ, USA.
John AlemanDepartment of Biological Sciences, Northern Arizona University, Flagstaff, AZ, USA.
Joseph R MihaljevicSchool of Informatics, Computing and Cyber Systems, Northern Arizona University, Flagstaff, AZ, USA.
Sonora OlivasThe Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA.
Jane MarksDepartment of Biological Sciences, Northern Arizona University, Flagstaff, AZ, USA.
Ricardo IzurietaCollege of Public Health, University of South Florida, Tampa, FL, USA.
Nathan NietoDepartment of Biological Sciences, Northern Arizona University, Flagstaff, AZ, USA.
Paul KeimThe Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA.
Gabriel TruebaUniversidad San Francisco de Quito, Colegio de Ciencias Biologicas y Ambientales, Instituto de Microbiologia, Quito, Ecuador.
J Gregory CaporasoThe Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA.
Talima PearsonThe Pathogen and Microbiome Institute, Northern Arizona University, Flagstaff, AZ, USA. tpearson@nau.edu.
Northern Arizona University · USUniversidad San Francisco de Quito · ECUniversity of South Florida · US

Funding

SSCIMA: Integrating Analysis of Socio-economic Sub-population Dynamics to Improve Spatial Models of Infectious DiseaseU54MD012388 · NIMHD · NORTHERN ARIZONA UNIVERSITY · PI Julie A. Baldwin · 2017 to 2026
$49.7M
Environmental sampling of Leptospira species to link to human leptospirosis casesR15AI101913 · NIAID · NORTHERN ARIZONA UNIVERSITY · PI PEARSON, TALIMA ROSS · 2013 to 2013
$436k
NIAID NIH HHS R15 AI101913NIMHD NIH HHS U54 MD012388
6 · The paper itself

Abstract

backgroundLeptospira are shed into the environment via urine of infected animals. Rivers are thought to be an important risk factor for transmission to humans, though much is unknown about the types of environment or characteristics that favor survival. To address this, we screened for Leptospira DNA in two rivers in rural Ecuador where Leptospirosis is endemic.

resultsWe collected 112 longitudinal samples and recorded pH, temperature, river depth, precipitation, and dissolved oxygen. We also performed a series of three experiments designed to provide insight into Leptospira presence in the soil. In the first soil experiment, we characterized prevalence and co-occurrence of Leptospira with other bacterial taxa in the soil at dispersed sites along the rivers (n = 64). In the second soil experiment, we collected 24 river samples and 48 soil samples at three points along eight transects to compare the likelihood of finding Leptospira in the river and on the shore at different distances from the river. In a third experiment, we tested whether Leptospira presence is associated with soil moisture by collecting 25 soil samples from two different sites. In our river experiment, we found pathogenic Leptospira in only 4 (3.7%) of samples. In contrast, pathogenic Leptospira species were found in 22% of shore soil at dispersed sites, 16.7% of soil samples (compared to 4.2% of river samples) in the transects, and 40% of soil samples to test for associations with soil moisture.

conclusionsOur data are limited to two sites in a highly endemic area, but the scarcity of Leptospira DNA in the river is not consistent with the widespread contention of the importance of river water for leptospirosis transmission. While Leptospira may be shed directly into the river, onto the shores, or washed into the river from more remote sites, massive dilution and limited persistence in rivers may reduce the environmental load and therefore, the epidemiological significance of such sources. It is also possible that transmission may occur more frequently on shores where people are liable to be barefoot. Molecular studies that further explore the role of rivers and water bodies in the epidemiology of leptospirosis are needed.

Indexed as

AnimalsDNA, BacterialDNA, RibosomalEcuadorEndemic DiseasesHumansLeptospiraLeptospirosisPhylogenyPrevalenceRiversRNA, Ribosomal, 16SRural PopulationSequence Analysis, DNASoilSoil MicrobiologyDNA, BacterialDNA, RibosomalRNA, Ribosomal, 16SSoilEnvironmental detection of LeptospiraEpidemiology of leptospirosisLeptospira in soilLeptospira in waterLeptospirosis transmission

Identifiers

PMID33413126
PMCPMC7792295
OpenAlexW3119152431

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.