Evidence map›Paper›PMID 33413108›Full record

ArticleBMC genomics2021

Analysis across diverse fish species highlights no conserved transcriptome signature for proactive behaviour.

Sonia Rey, Xingkun Jin, Børge Damsgård, Marie-Laure Bégout, Simon Mackenzie

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
5.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 4 countries.

Sonia ReyInstitute of Aquaculture, University of Stirling, Stirlingshire, FK9 4LA, UK.
Xingkun JinInstitute of Aquaculture, University of Stirling, Stirlingshire, FK9 4LA, UK.
Børge DamsgårdFaculty of Biosciences, Fisheries and Economics, UiT The Arctic University of Norway, 9037, Tromsø, Norway.
Marie-Laure BégoutIfremer, Place Gaby Coll, 17137 L'Houmeau, La Rochelle, France.
Simon MackenzieInstitute of Aquaculture, University of Stirling, Stirlingshire, FK9 4LA, UK. simon.mackenzie@stir.ac.uk.ORCID http://orcid.org/0000-0003-1845-6826
University of Stirling · GBIfremer · FRUiT The Arctic University of Norway · NO

Funding

Seventh Framework Programme KBBE-2010-4 Contract nº 265957
6 · The paper itself

Abstract

backgroundConsistent individual differences in behaviour, known as animal personalities, have been demonstrated within and across species. In fish, studies applying an animal personality approach have been used to resolve variation in physiological and molecular data suggesting a linkage, genotype-phenotype, between behaviour and transcriptome regulation. In this study, using three fish species (zebrafish; Danio rerio, Atlantic salmon; Salmo salar and European sea bass; Dicentrarchus labrax), we firstly address whether personality-specific mRNA transcript abundances are transferrable across distantly-related fish species and secondly whether a proactive transcriptome signature is conserved across all three species.

resultsPrevious zebrafish transcriptome data was used as a foundation to produce a curated list of mRNA transcripts related to animal personality across all three species. mRNA transcript copy numbers for selected gene targets show that differential mRNA transcript abundance in the brain appears to be partially conserved across species relative to personality type. Secondly, we performed RNA-Seq using whole brains from S. salar and D. labrax scoring positively for both behavioural and molecular assays for proactive behaviour. We further enriched this dataset by incorporating a zebrafish brain transcriptome dataset specific to the proactive phenotype. Our results indicate that cross-species molecular signatures related to proactive behaviour are functionally conserved where shared functional pathways suggest that evolutionary convergence may be more important than individual mRNAs.

conclusionsOur data supports the proposition that highly polygenic clusters of genes, with small additive effects, likely support the underpinning molecular variation related to the animal personalities in the fish used in this study. The polygenic nature of the proactive brain transcriptome across all three species questions the existence of specific molecular signatures for proactive behaviour, at least at the granularity of specific regulatory gene modules, level of genes, gene networks and molecular functions.

Indexed as

BassSalmo salarAnimalsRNA, MessengerRNA-SeqTranscriptomeZebrafishRNA, MessengerAnimal personalityConvergent evolutionFish behaviourPhenotype variationProactiveRNA sequencing

Identifiers

PMID33413108
PMCPMC7792025
OpenAlexW3111915347

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.