Evidence map›Paper›PMID 33413079›Full record

ArticleBMC molecular and cell biology2021

Mechanism of hERG inhibition by gating-modifier toxin, APETx1, deduced by functional characterization.

Kazuki Matsumura, Takushi Shimomura, Yoshihiro Kubo, Takayuki Oka, Naohiro Kobayashi, Shunsuke Imai, Naomi Yanase, Madoka Akimoto, Masahiro Fukuda, Mariko Yokogawa and 5 more

Open access · goldAbstract read
In one paragraph

Article in BMC molecular and cell biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.7field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

  1. Review
  2. Sea AnemoneMarine drugs · 2025
    Article
  3. Article
  4. Article
  5. Voltage-Gated KMarine drugs · 2024
    Review
  6. Article
  7. Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 1 country.

Kazuki MatsumuraGraduate School of Pharmaceutical Sciences, Keio University, Shibakoen, Minato-ku, Tokyo, 105-8512, Japan.
Takushi ShimomuraDivision of Biophysics and Neurobiology, Department of Molecular and Cellular Physiology, National Institute for Physiological Sciences, Myodaiji, Okazaki-shi, Aichi, 444-8585, Japan.
Yoshihiro KuboDivision of Biophysics and Neurobiology, Department of Molecular and Cellular Physiology, National Institute for Physiological Sciences, Myodaiji, Okazaki-shi, Aichi, 444-8585, Japan.
Takayuki OkaNanion Technologies Japan K.K., Tokyo Laboratory, Wakamatsu-cho, Shinjuku-ku, Tokyo, 162-0056, Japan.
Naohiro KobayashiInstitute for Protein Research, Osaka University, Yamadaoka, Suita-shi, Osaka, 565-0871, Japan.
Shunsuke ImaiGraduate School of Pharmaceutical Sciences, The University of Tokyo, Hongo, Bunkyo-ku, Tokyo, 113-0033, Japan.
Naomi YanaseGraduate School of Pharmaceutical Sciences, Keio University, Shibakoen, Minato-ku, Tokyo, 105-8512, Japan.
Madoka AkimotoGraduate School of Pharmaceutical Sciences, Keio University, Shibakoen, Minato-ku, Tokyo, 105-8512, Japan.
Masahiro FukudaGraduate School of Pharmaceutical Sciences, Keio University, Shibakoen, Minato-ku, Tokyo, 105-8512, Japan.
Mariko YokogawaGraduate School of Pharmaceutical Sciences, Keio University, Shibakoen, Minato-ku, Tokyo, 105-8512, Japan.
Kazuyoshi IkedaGraduate School of Pharmaceutical Sciences, Keio University, Shibakoen, Minato-ku, Tokyo, 105-8512, Japan.
Jun-Ichi KuritaGraduate School of Medical Life Science, Yokohama City University, Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan.
Yoshifumi NishimuraGraduate School of Medical Life Science, Yokohama City University, Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan.
Ichio ShimadaGraduate School of Pharmaceutical Sciences, The University of Tokyo, Hongo, Bunkyo-ku, Tokyo, 113-0033, Japan.
Masanori OsawaGraduate School of Pharmaceutical Sciences, Keio University, Shibakoen, Minato-ku, Tokyo, 105-8512, Japan. osawa-ms@pha.keio.ac.jp.ORCID http://orcid.org/0000-0002-1285-4316
Keio University · JPNational Institute for Physiological Sciences · JPThe University of Tokyo · JPYokohama City University · JPThe University of Osaka · JP

Funding

Japan Agency for Medical Research and Development JP18am0101033Japan Agency for Medical Research and Development JP20am0101073Japan Society for the Promotion of Science KAKENHI JP17H03978Japan Society for the Promotion of Science KAKENHI JP19H04973
6 · The paper itself

Abstract

backgroundHuman ether-à-go-go-related gene potassium channel 1 (hERG) is a voltage-gated potassium channel, the voltage-sensing domain (VSD) of which is targeted by a gating-modifier toxin, APETx1. APETx1 is a 42-residue peptide toxin of sea anemone Anthopleura elegantissima and inhibits hERG by stabilizing the resting state. A previous study that conducted cysteine-scanning analysis of hERG identified two residues in the S3-S4 region of the VSD that play important roles in hERG inhibition by APETx1. However, mutational analysis of APETx1 could not be conducted as only natural resources have been available until now. Therefore, it remains unclear where and how APETx1 interacts with the VSD in the resting state.

resultsWe established a method for preparing recombinant APETx1 and determined the NMR structure of the recombinant APETx1, which is structurally equivalent to the natural product. Electrophysiological analyses using wild type and mutants of APETx1 and hERG revealed that their hydrophobic residues, F15, Y32, F33, and L34, in APETx1, and F508 and I521 in hERG, in addition to a previously reported acidic hERG residue, E518, play key roles in the inhibition of hERG by APETx1. Our hypothetical docking models of the APETx1-VSD complex satisfied the results of mutational analysis.

conclusionsThe present study identified the key residues of APETx1 and hERG that are involved in hERG inhibition by APETx1. These results would help advance understanding of the inhibitory mechanism of APETx1, which could provide a structural basis for designing novel ligands targeting the VSDs of K

Indexed as

Amino Acid SequenceAnimalsCnidarian VenomsDNA Mutational AnalysisERG1 Potassium ChannelHEK293 CellsHumansHydrogen-Ion ConcentrationHydrophobic and Hydrophilic InteractionsIon Channel GatingModels, MolecularMolecular Docking SimulationMutant ProteinsMutationRecombinant ProteinsSolutionsAPETx1, Anthopleura elegantissimaCnidarian VenomsERG1 Potassium ChannelKCNH2 protein, humanMutant ProteinsRecombinant ProteinsSolutions

Identifiers

PMID33413079
PMCPMC7791793
OpenAlexW3121089672

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.