Evidence map›Paper›PMID 33412588›Full record

ArticleNucleic acids research2021

A Polycomb repressive complex is required for RNAi-mediated heterochromatin formation and dynamic distribution of nuclear bodies.

Jing Xu, Xiaolu Zhao, Fengbiao Mao, Venkatesha Basrur, Beatrix Ueberheide, Brian T Chait, C David Allis, Sean D Taverna, Shan Gao, Wei Wang and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.5field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 43 citations in OpenAlex.

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  15. Transcriptome analysis of the binucleate ciliateMolecular biology of the cell · 2023
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 5 institutions in 2 countries.

Jing XuSchool of Life Science, Shanxi University, Taiyuan, Shanxi 030006, China.
Xiaolu ZhaoDepartment of Pathology, University of Michigan, Ann Arbor, MI 48109, USA.
Fengbiao MaoDepartment of Pathology, University of Michigan, Ann Arbor, MI 48109, USA.
Venkatesha BasrurProteomics Resource Facility, Department of Pathology, University of Michigan, Ann Arbor, MI 48109, USA.
Beatrix UeberheideLaboratory of Mass Spectrometry and Gaseous Ion Chemistry, the Rockefeller University, New York, NY 10065, USA.
Brian T ChaitLaboratory of Mass Spectrometry and Gaseous Ion Chemistry, the Rockefeller University, New York, NY 10065, USA.
C David AllisLaboratory of Chromatin Biology and Epigenetics, the Rockefeller University, New York, NY 10065, USA.
Sean D TavernaDepartment of Pharmacology and Molecular Sciences and the Center for Epigenetics, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA.
Shan GaoInstitute of Evolution & Marine Biodiversity, Ocean University of China, Qingdao 266003, China.
Wei WangSchool of Life Science, Shanxi University, Taiyuan, Shanxi 030006, China.
Yifan LiuDepartment of Pathology, University of Michigan, Ann Arbor, MI 48109, USA.ORCID 0000-0002-3896-0002
University of Michigan · USRockefeller University · USShanxi University · CNJohns Hopkins University · USOcean University of China · CN

Funding

National Resource for Mass Spectrom of Biological MacromoleculesP41GM103314 · NIGMS · ROCKEFELLER UNIVERSITY · PI CHAIT, BRIAN T · 2012 to 2017
$9.9M
Epigenetic profiling and enzymatic regulation of H3K23me3 during cellular differentiationR01GM118760 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI TAVERNA, SEAN D. · 2017 to 2020
$1.5M
Polycomb-mediated heterochromatin formation in TetrahymenaR01GM087343 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LIU, YIFAN · 2010 to 2014
$1.4M
Human DNA transposons: evolutionary history and genomic impactR01GM077582 · NIGMS · UNIVERSITY OF UTAH · PI FESCHOTTE, CEDRIC · 2007 to 2015
$1.4M
Using ChAP-MS to Study Macromolecular Chromatin Composition during TranscriptionR01GM106024 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI TACKETT, ALAN, TAVERNA, SEAN D. · 2013 to 2016
$1.2M
NIGMS NIH HHS P41 GM103314NIGMS NIH HHS R01 GM077582NIGMS NIH HHS R01 GM087343NIGMS NIH HHS R01 GM106024NIGMS NIH HHS R01 GM118760
6 · The paper itself

Abstract

Polycomb group (PcG) proteins are widely utilized for transcriptional repression in eukaryotes. Here, we characterize, in the protist Tetrahymena thermophila, the EZL1 (E(z)-like 1) complex, with components conserved in metazoan Polycomb Repressive Complexes 1 and 2 (PRC1 and PRC2). The EZL1 complex is required for histone H3 K27 and K9 methylation, heterochromatin formation, transposable element control, and programmed genome rearrangement. The EZL1 complex interacts with EMA1, a helicase required for RNA interference (RNAi). This interaction is implicated in co-transcriptional recruitment of the EZL1 complex. Binding of H3K27 and H3K9 methylation by PDD1-another PcG protein interacting with the EZL1 complex-reinforces its chromatin association. The EZL1 complex is an integral part of Polycomb bodies, which exhibit dynamic distribution in Tetrahymena development: Their dispersion is driven by chromatin association, while their coalescence by PDD1, likely via phase separation. Our results provide a molecular mechanism connecting RNAi and Polycomb repression, which coordinately regulate nuclear bodies and reorganize the genome.

Indexed as

RNA InterferenceChromatin Assembly and DisassemblyHeterochromatinHistonesPolycomb Repressive Complex 1Polycomb Repressive Complex 2Protein Processing, Post-TranslationalProtozoan ProteinsTetrahymena thermophilaHeterochromatinHistonesPdd1 protein, TetrahymenaPolycomb Repressive Complex 1Polycomb Repressive Complex 2Protozoan Proteins

Identifiers

PMID33412588
PMCPMC8191774
OpenAlexW3118541288

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.