Evidence map›Paper›PMID 33412110›Full record

ArticleCell chemical biology2021

Functional mimicry revealed by the crystal structure of an eIF4A:RNA complex bound to the interfacial inhibitor, desmethyl pateamine A.

Sai Kiran Naineni, Jason Liang, Kenneth Hull, Regina Cencic, Mingzhao Zhu, Peter Northcote, Paul Teesdale-Spittle, Daniel Romo, Bhushan Nagar, Jerry Pelletier

Open access · bronzeAbstract read
In one paragraph

Article in Cell chemical biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed
2.8field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 43 citations in OpenAlex.

  1. Review
  2. Article
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  4. In Silico Analysis of Potential Stabilizer Binding Sites at Protein-RNA Interfaces.Computational and structural biotechnology journal · 2026
    Article
  5. Combined HDAC and eIF4A inhibition: A novel epigenetic therapy for pancreatic ductal adenocarcinoma.Drug resistance updates : reviews and commentaries in antimicrobial and anticancer chemotherapy · 2026
    Article
  6. Structural Chemistry of Helicase Inhibition.Journal of medicinal chemistry · 2025
    Review
  7. Article
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  16. Review
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  20. Stereoselective synthesis of (RSC advances · 2023
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 3 countries.

Sai Kiran NaineniMcGill University, Department of Biochemistry, Rm 810, 3655 Promenade Sir William Osler, Montreal, QC H3G 1Y6, Canada.
Jason LiangMcGill University, Department of Biochemistry, Rm 810, 3655 Promenade Sir William Osler, Montreal, QC H3G 1Y6, Canada.
Kenneth HullDepartment of Chemistry and Biochemistry and The Baylor CPRIT Synthesis and Drug Lead Discovery Laboratory, Baylor University, 101 Bagby Avenue, Waco, TX 76798-7348, USA.
Regina CencicMcGill University, Department of Biochemistry, Rm 810, 3655 Promenade Sir William Osler, Montreal, QC H3G 1Y6, Canada.
Mingzhao ZhuDepartment of Chemistry and Biochemistry and The Baylor CPRIT Synthesis and Drug Lead Discovery Laboratory, Baylor University, 101 Bagby Avenue, Waco, TX 76798-7348, USA.
Peter NorthcoteFerrier Research Institute and Centre for Biodiscovery, Victoria University of Wellington, Wellington, New Zealand.
Paul Teesdale-SpittleSchool of Biological Sciences and Centre for Biodiscovery, Victoria University of Wellington, Wellington, New Zealand.
Daniel RomoDepartment of Chemistry and Biochemistry and The Baylor CPRIT Synthesis and Drug Lead Discovery Laboratory, Baylor University, 101 Bagby Avenue, Waco, TX 76798-7348, USA.
Bhushan NagarMcGill University, Department of Biochemistry, Rm 810, 3655 Promenade Sir William Osler, Montreal, QC H3G 1Y6, Canada. Electronic address: bhushan.nagar@mcgill.ca.
Jerry PelletierMcGill University, Department of Biochemistry, Rm 810, 3655 Promenade Sir William Osler, Montreal, QC H3G 1Y6, Canada; Department of Oncology, McGill University, Montreal, Quebec, Canada; Rosalind and Morris Goodman Cancer Research Center, Montreal H3A 1A3, Canada. Electronic address: jerry.pelletier@mcgill.ca.
McGill University · CABaylor University · USVictoria University of Wellington · NZOccupational Cancer Research Centre · CA

Funding

Synthetic/Mechanistic Studies of Bioactive Marine AgentsR37GM052964 · NIGMS · TEXAS A&M UNIVERSITY · PI ROMO, DANIEL · 2009 to 2019
$3.6M
Pharmacophore-Directed  Retrosynthesis Applied to Bioactive Natural Products Informing Mechanism of Action StudiesR35GM134910 · NIGMS · BAYLOR UNIVERSITY · PI DANIEL ROMO · 2020 to 2026
$2.7M
SYNTHETIC/MECHANISTIC STUDIES OF BIOACTIVE MARINE AGENTSR01GM052964 · NIGMS · TEXAS A&M UNIVERSITY SYSTEM · PI ROMO, DANIEL · 2000 to 2008
$2.4M
STRUCTURAL/SYNTHETIC STUDIES OF BIOACTIVE MARINE AGENTSR29GM052964 · NIGMS · TEXAS A&M UNIVERSITY SYSTEM · PI ROMO, DANIEL · 1995 to 1999
–
CIHR FDN-148366CIHR MOP-133535NIGMS NIH HHS R01 GM052964NIGMS NIH HHS R29 GM052964NIGMS NIH HHS R35 GM134910NIGMS NIH HHS R37 GM052964
6 · The paper itself

Abstract

Interfacial inhibitors exert their biological effects through co-association with two macromolecules. The pateamine A (PatA) class of molecules function by stabilizing eukaryotic initiation factor (eIF) 4A RNA helicase onto RNA, resulting in translation initiation inhibition. Here, we present the crystal structure of an eIF4A1:RNA complex bound to an analog of the marine sponge-derived natural product PatA, C5-desmethyl PatA (DMPatA). One end of this small molecule wedges itself between two RNA bases while the other end is cradled by several protein residues. Strikingly, DMPatA interacts with the eIF4A1:RNA complex in an almost identical fashion as rocaglamide A (RocA), despite being completely unrelated from a structural standpoint. The structural data rationalize the ability of PatA analogs to target a wider range of RNA substrates compared to RocA. We define the molecular basis of how DMPatA is able to clamp eIF4A1 onto RNA, imparting potent inhibitory properties to this molecule.

Indexed as

Cell LineCrystallography, X-RayEpoxy CompoundsEukaryotic Initiation Factor-4AHumansMacrolidesModels, MolecularMolecular ConformationRNAThiazolesEpoxy CompoundsEukaryotic Initiation Factor-4AMacrolidespateamine ARNAThiazolesC5-desmethyl pateamine ADMPatAeIF4AeIF4Finterfacial inhibitorpateamine Atranslation inhibitortranslation initiation

Identifiers

PMID33412110
PMCPMC8626061
OpenAlexW3120765402

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.