Evidence map›Paper›PMID 33411789›Full record

ArticlePLoS pathogens2021

The N-terminus of varicella-zoster virus glycoprotein B has a functional role in fusion.

Stefan L Oliver, Yi Xing, Dong-Hua Chen, Soung Hun Roh, Grigore D Pintilie, David A Bushnell, Marvin H Sommer, Edward Yang, Andrea Carfi, Wah Chiu and 1 more

Open access · goldAbstract read
In one paragraph

Article in PLoS pathogens, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
  7. Structure and Antigenicity of Kaposi's Sarcoma-Associated Herpesvirus Glycoprotein B.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  8. Article
  9. Article
  10. Computational design of prefusion-stabilized Herpesvirus gB trimers.bioRxiv : the preprint server for biology · 2024
    Article
  11. Article
  12. Article
  13. The Structures and Functions of VZV Glycoproteins.Current topics in microbiology and immunology · 2023
    Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

Stefan L OliverDepartment of Pediatrics, Stanford University School of Medicine, Stanford, California, United States of America.ORCID 0000-0002-4614-7310
Yi XingGSK Vaccines, Cambridge, Massachusetts, United States of America.ORCID 0000-0002-2080-6146
Dong-Hua ChenStructural Biology, Stanford University School of Medicine, Stanford, California, United States of America.ORCID 0000-0002-5247-0106
Soung Hun RohDepartment of Biological Sciences, Institute of Molecular Biology & Genetics, Seoul National University, Seoul, Korea.ORCID 0000-0003-3851-7200
Grigore D PintilieBioengineering, Stanford University School of Medicine, Stanford, California, United States of America.ORCID 0000-0002-0848-5335
David A BushnellStructural Biology, Stanford University School of Medicine, Stanford, California, United States of America.ORCID 0000-0001-8736-8403
Marvin H SommerDepartment of Pediatrics, Stanford University School of Medicine, Stanford, California, United States of America.ORCID 0000-0001-8457-9061
Edward YangDepartment of Pediatrics, Stanford University School of Medicine, Stanford, California, United States of America.
Andrea CarfiGSK Vaccines, Cambridge, Massachusetts, United States of America.
Wah ChiuBioengineering, Stanford University School of Medicine, Stanford, California, United States of America.ORCID 0000-0002-8910-3078
Ann M ArvinDepartment of Pediatrics, Stanford University School of Medicine, Stanford, California, United States of America.ORCID 0000-0001-5404-1498
Stanford University · USSeoul National University · KRSLAC National Accelerator Laboratory · US

Funding

3 D ELECTRON MICROSCOPY OF MACROMOLECULES (5P41RR002250-27)P41GM103832 · NIGMS · STANFORD UNIVERSITY · PI CHIU, WAH · 2012 to 2019
$15.1M
Unified Data Resource for Large Complexes Determined by Cryo-Electron MicroscopyR01GM079429 · NIGMS · STANFORD UNIVERSITY · PI CHIU, WAH · 2007 to 2021
$11.6M
Varicella-Zoster Virus: T Cell/Skin Tropisms &ImmunityR01AI020459 · NIAID · STANFORD UNIVERSITY · PI OLIVER, STEFAN LYNE · 1985 to 2023
$6.4M
Acquisition of a 300 kV Electron Microscope for Structural BiologyS10OD021600 · OD · STANFORD UNIVERSITY · PI CHIU, WAH · 2016 to 2016
$2.0M
Varicella-Zoster Virus: T Cell/Skin Tropisms & ImmunityR37AI020459 · NIAID · STANFORD UNIVERSITY · PI ARVIN, ANN · 2016 to 2020
$2.0M
Varicella zoster virus: molecular controls of cell fusion-dependent pathogenesisR01AI102546 · NIAID · STANFORD UNIVERSITY · PI ARVIN, ANN · 2012 to 2016
$1.9M
NIAID NIH HHS R01 AI020459NIAID NIH HHS R01 AI102546NIAID NIH HHS R37 AI020459NIGMS NIH HHS P41 GM103832NIGMS NIH HHS R01 GM079429NIH HHS S10 OD021600
6 · The paper itself

Abstract

Varicella-zoster virus (VZV) is a medically important alphaherpesvirus that induces fusion of the virion envelope and the cell membrane during entry, and between cells to form polykaryocytes within infected tissues during pathogenesis. All members of the Herpesviridae, including VZV, have a conserved core fusion complex composed of glycoproteins, gB, gH and gL. The ectodomain of the primary fusogen, gB, has five domains, DI-V, of which DI contains the fusion loops needed for fusion function. We recently demonstrated that DIV is critical for fusion initiation, which was revealed by a 2.8Å structure of a VZV neutralizing mAb, 93k, bound to gB and mutagenesis of the gB-93k interface. To further assess the mechanism of mAb 93k neutralization, the binding site of a non-neutralizing mAb to gB, SG2, was compared to mAb 93k using single particle cryogenic electron microscopy (cryo-EM). The gB-SG2 interface partially overlapped with that of gB-93k but, unlike mAb 93k, mAb SG2 did not interact with the gB N-terminus, suggesting a potential role for the gB N-terminus in membrane fusion. The gB ectodomain structure in the absence of antibody was defined at near atomic resolution by single particle cryo-EM (3.9Å) of native, full-length gB purified from infected cells and by X-ray crystallography (2.4Å) of the transiently expressed ectodomain. Both structures revealed that the VZV gB N-terminus (aa72-114) was flexible based on the absence of visible structures in the cryo-EM or X-ray crystallography data but the presence of gB N-terminal peptides were confirmed by mass spectrometry. Notably, N-terminal residues 109KSQD112 were predicted to form a small α-helix and alanine substitution of these residues abolished cell-cell fusion in a virus-free assay. Importantly, transferring the 109AAAA112 mutation into the VZV genome significantly impaired viral propagation. These data establish a functional role for the gB N-terminus in membrane fusion broadly relevant to the Herpesviridae.

Indexed as

Membrane FusionVirus InternalizationAmino Acid SequenceCrystallography, X-RayHerpesvirus 3, HumanHumansMelanomaModels, MolecularMutationProtein BindingProtein ConformationProtein DomainsSequence HomologyTumor Cells, CulturedViral Envelope Proteinsglycoprotein B, varicella-zoster virusViral Envelope Proteins

Identifiers

PMID33411789
PMCPMC7817050
OpenAlexW3119524370

What OpenQuestion holds

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LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.