Evidence map›Paper›PMID 33411343›Full record

ArticleJournal of clinical laboratory analysis2021

Expression profile of circular RNAs in cystic echinococcosis pericystic tissue.

Baheti Kalifu, Abulaihaiti Maitiseyiti, Xiaohu Ge, Xiong Chen, Yuan Meng

Open access · goldAbstract read
In one paragraph

Article in Journal of clinical laboratory analysis, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.1field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
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  5. Coding and Noncoding RNA Expression Profiles of Spleen CD4Contrast media & molecular imaging · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Baheti KalifuXinjiang Medical University, Urumqi, Xinjiang Uygur Autonomous Region, China.ORCID https://orcid.org/0000-0003-4781-5859
Abulaihaiti MaitiseyitiDepartment of Vascular and Hepatobilliry Surgery, People's Hospital of Xinjiang Uygur Autonomous Region, Urumqi, China.
Xiaohu GeDepartment of Vascular and Hepatobilliry Surgery, People's Hospital of Xinjiang Uygur Autonomous Region, Urumqi, China.
Xiong ChenXinjiang Medical University, Urumqi, Xinjiang Uygur Autonomous Region, China.
Yuan MengDepartment of Vascular and Hepatobilliry Surgery, People's Hospital of Xinjiang Uygur Autonomous Region, Urumqi, China.
People's Hospital of Xinjiang Uygur Autonomous Region · CNXinjiang Medical University · CN

Funding

project plan of People's Hospital of Xinjiang Uygur Autonomous Region 20190412
6 · The paper itself

Abstract

objectiveThe aim of the present study was to investigate the expression profiles of circular RNAs (circRNAs) in the pericystic tissue of patients with cystic echinococcosis (CE). PATIENTS AND

methodsCircRNA expression profiles were obtained by circRNA microarray of four matched pairs of pericystic tissues affected by CE and adjacent normal liver tissues. qRT-PCR was used to validate the differential expression of some circRNAs identified by the microarray analysis. The potential functions of the differentially expressed circRNAs in the CE pericystic tissues were predicted by bioinformatic analysis.

resultsCompared with the adjacent normal liver tissues, 177 circRNAs were upregulated and 166 circRNAs were downregulated in CE pericystic tissues based on a ≥2.0-fold change. The top 10 upregulated circRNAs were hsa_circRNA_001654,hsa_circRNA_103361,hsa_circRNA_001490,hsa_circRNA_104310,hsa_circRNA_100395,hsa_circRNA_102485,hsa_circRNA_001459,hsa_circRNA_104193,hsa_circRNA_400043, and hsa_circRNA_006773; The top 10 downregulated circRNAs were hsa_circRNA_400633,hsa_circRNA_404974,hsa_circRNA_068482 ,hsa_circRNA_100974,hsa_circRNA_049637,hsa_circRNA_404798,hsa_circRNA_400064,hsa_circRNA_004045,hsa_circRNA_101379, and hsa_circRNA_016771;The circRNA-seq results for 15 selected differentially expressed circRNAs were validated by qRT-PCR. The qRT-PCR analysis showed that hsa_circRNA_006773, hsa_circRNA_049637, hsa_circRNA_104349, and hsa_circRNA_406281 were differentially expressed in CE pericystic tissues when compared with their expression in the adjacent normal liver tissues. Interestingly, 319 miRNAs and 52 mRNAs were predicted to be adsorbed by these four differentially expressed circRNAs. Gene Ontology analysis revealed that these circRNAs may be involved in the response to organic cyclic compounds and endogenous stimuli and in cellular organismal processes.

conclusionDifferential expression of circRNAs may be associated with the development and progression of CE, and these circRNAs might be useful as biomarkers for prognosis prediction and as treatment targets.

Indexed as

TranscriptomeAdultEchinococcosisFemaleGene OntologyGene Regulatory NetworksHumansMaleMiddle AgedReproducibility of ResultsReverse Transcriptase Polymerase Chain ReactionRNA, CircularRNA, Circularcircular RNAcystic echinococcosisgene ontology analysismicroarraypathways analysis

Identifiers

PMID33411343
PMCPMC7957996
OpenAlexW3118646391

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.