Evidence map›Paper›PMID 33410674›Full record

ReviewChemical reviews2021

Drug Design Strategies to Avoid Resistance in Direct-Acting Antivirals and Beyond.

Ashley N Matthew, Florian Leidner, Gordon J Lockbaum, Mina Henes, Jacqueto Zephyr, Shurong Hou, Desaboini Nageswara Rao, Jennifer Timm, Linah N Rusere, Debra A Ragland and 7 more

Abstract readReview
In one paragraph

Review in Chemical reviews, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 48 papers.

0numbers the graph read from it
0cells of the map it votes in
48citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

48 citing papers in PubMed.

  1. Review
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  16. SARS-CoV-2 MSLAS discovery : advancing life sciences R & D · 2024
    Article
  17. Article
  18. Small Molecule Drugs Targeting Viral Polymerases.Pharmaceuticals (Basel, Switzerland) · 2024
    Review
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Ashley N MatthewDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, Massachusetts 01605, United States.
Florian LeidnerDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, Massachusetts 01605, United States.
Gordon J LockbaumDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, Massachusetts 01605, United States.ORCID 0000-0003-2720-6984
Mina HenesDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, Massachusetts 01605, United States.
Jacqueto ZephyrDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, Massachusetts 01605, United States.
Shurong HouDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, Massachusetts 01605, United States.
Desaboini Nageswara RaoDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, Massachusetts 01605, United States.
Jennifer TimmDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, Massachusetts 01605, United States.ORCID 0000-0001-9750-3293
Linah N RusereDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, Massachusetts 01605, United States.
Debra A RaglandDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, Massachusetts 01605, United States.
Janet L PaulsenDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, Massachusetts 01605, United States.ORCID 0000-0003-3169-356X
Kristina PrachanronarongDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, Massachusetts 01605, United States.
Djade I SoumanaDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, Massachusetts 01605, United States.
Ellen A NalivaikaDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, Massachusetts 01605, United States.
Nese Kurt YilmazDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, Massachusetts 01605, United States.ORCID 0000-0002-5036-676X
Akbar AliDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, Massachusetts 01605, United States.ORCID 0000-0003-3491-791X
Celia A SchifferDepartment of Biochemistry and Molecular Pharmacology, University of Massachusetts Medical School, Worcester, Massachusetts 01605, United States.ORCID 0000-0003-2270-6613

Funding

Tracking the evolution of drug resistance for highly potent HIV protease inhibitoP01GM109767 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI SHERMAN, BRIAN WOODY · 2014 to 2018
$8.0M
Drug Resistance in HCV NS3/4A - Inhibitor binding versus substrate recognitionR01AI085051 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI SCHIFFER, CELIA A. · 2010 to 2019
$4.6M
Integration of Evolution to Avoid Resistance in Structure Based Drug DesignR01GM135919 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI SCHIFFER, CELIA A. · 2020 to 2023
$2.5M
Design of Protease Inhibitors to Target HTLV-1R21AI149716 · NIAID · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI SCHIFFER, CELIA A. · 2020 to 2021
$461k
HCV protease: from atomic mechanism for drug resistance to novel drug designF31GM103259 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI SOUMANA, DJADE IBRAHIM · 2013 to 2015
$86k
Fragment-based drug design and substrate envelope model of the Zika virus proteaseF31GM131635 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI ZEPHYR, JACQUETO · 2019 to 2021
$80k
The Interdependence of Drug Resistance: HIV-1 ProteaseF31GM111101 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI RAGLAND, DEBRA ANN · 2014 to 2016
$78k
Structure-based design of robust cross-genotypic NS3/4A protease inhibitors that avoid resistanceF31GM119345 · NIGMS · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI MATTHEW, ASHLEY NICOLE · 2016 to 2017
$64k
NIAID NIH HHS R01 AI085051NIAID NIH HHS R21 AI149716NIGMS NIH HHS F31 GM103259NIGMS NIH HHS F31 GM111101NIGMS NIH HHS F31 GM119345NIGMS NIH HHS F31 GM131635NIGMS NIH HHS P01 GM109767NIGMS NIH HHS R01 GM135919
6 · The paper itself

Abstract

Drug resistance is prevalent across many diseases, rendering therapies ineffective with severe financial and health consequences. Rather than accepting resistance after the fact, proactive strategies need to be incorporated into the drug design and development process to minimize the impact of drug resistance. These strategies can be derived from our experience with viral disease targets where multiple generations of drugs had to be developed to combat resistance and avoid antiviral failure. Significant efforts including experimental and computational structural biology, medicinal chemistry, and machine learning have focused on understanding the mechanisms and structural basis of resistance against direct-acting antiviral (DAA) drugs. Integrated methods show promise for being predictive of resistance and potency. In this review, we give an overview of this research for human immunodeficiency virus type 1, hepatitis C virus, and influenza virus and the lessons learned from resistance mechanisms of DAAs. These lessons translate into rational strategies to avoid resistance in drug design, which can be generalized and applied beyond viral targets. While resistance may not be completely avoidable, rational drug design can and should incorporate strategies at the outset of drug development to decrease the prevalence of drug resistance.

Indexed as

Antiviral AgentsComputational BiologyDrug DesignDrug Resistance, ViralEnzyme InhibitorsHepacivirusHIV-1HumansMachine LearningMutationOrthomyxoviridaePharmaceutical PreparationsProtein BindingSignal TransductionStructure-Activity RelationshipViral ProteinsAntiviral AgentsEnzyme InhibitorsPharmaceutical PreparationsViral Proteins

Identifiers

PMID33410674
PMCPMC8126998

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.