Evidence map›Paper›PMID 33410101›Full record

ArticleBrazilian journal of microbiology : [publication of the Brazilian Society for Microbiology]2021

Genomic analyses of Biston suppressaria nucleopolyhedrovirus: a viral isolate obtained from the tea looper caterpillar, Biston suppressaria (Guenée, 1857).

Lucas Boeni de Oliveira, Daniel Ricardo Sosa-Gómez, Bergmann Morais Ribeiro, Daniel M P Ardisson-Araújo

Open access · greenAbstract read
In one paragraph

Article in Brazilian journal of microbiology : [publication of the Brazilian Society for Microbiology], 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
0.2field-weighted citation impact, top 53% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 2 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Lucas Boeni de OliveiraLaboratory of Insect Virology, Department of Biochemistry and Molecular Biology, Federal University of Santa Maria, Santa Maria, RS, 97105-900, Brazil.
Daniel Ricardo Sosa-GómezEmbrapa Soja, Londrina, PR, 86001-970, Brazil.
Bergmann Morais RibeiroLaboratory of Baculovirus, Cell Biology Department, University of Brasilia, Brasilia, DF, 70910-900, Brazil.
Daniel M P Ardisson-AraújoLaboratory of Insect Virology, Department of Biochemistry and Molecular Biology, Federal University of Santa Maria, Santa Maria, RS, 97105-900, Brazil. daniel.araujo@ufsm.br.ORCID http://orcid.org/0000-0002-6292-7990
Universidade Federal de Santa Maria · BRBrazilian Agricultural Research Corporation · BRUniversidade de Brasília · BR

Funding

Conselho Nacional de Desenvolvimento Científico e Tecnológico 305398/2018-0Conselho Nacional de Desenvolvimento Científico e Tecnológico 305468/2019-7Conselho Nacional de Desenvolvimento Científico e Tecnológico 428799/2018-3Coordenação de Aperfeiçoamento de Pessoal de Nível Superior 23038.004173/2019-93Fundação de Apoio à Pesquisa do Distrito Federal 193.001532/2016
6 · The paper itself

Abstract

We described the complete genome sequence of a novel baculovirus isolate of species Buzura suppressaria nucleopolyhedrovirus, called by isolate CNPSo-25. The occlusion bodies were found to be polyhedral in shape and to contain virions with singly embedded nucleocapsids. The size of the genome is 121,377 bp with a G+C content of 36.7%. We annotated 131 ORFs that cover 90.42% of the genome. Moreover, phylogenetic inference indicated that CNPSo-25 is a member of genus Alphabaculovirus that clustered together with two other Chinese isolates of the same species. We called the virus by Biston suppressaria nucleopolyhedrovirus isolate CNPSo-25 (BisuNPV-CNPSo-25), as Buzura was placed inside the lepidopteran genus Biston. As expected, we detected intra-population variability in the virus sample when the novel isolate was compared to the Chinese isolates: 292 single nucleotide variants were found in the genome, with 181 affecting the protein product. The closest representatives of other species to BisuNPV-CNPSo-25 was found to be Sucra jujuba nucleopolyhedrovirus and Hyposidra talaca nucleopolyhedrovirus, two other virus isolates of geometrid caterpillars. The study of baculovirus genomes is of importance for the development of tools for insect pest biological control and biotechnology.

Indexed as

Genome, ViralGenomicsAnimalsBase CompositionGenes, ViralMothsNucleopolyhedrovirusesPhylogenySequence Analysis, DNATeaVirionWhole Genome SequencingTeaAlphabaculovirusBiological controlBiston suppressariaBuzura suppressaria nucleopolyhedrovirusGeometrid

Identifiers

PMID33410101
PMCPMC7966673
OpenAlexW3118587567

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.