ArticleRice (New York, N.Y.)2021
Dynamic genome-wide association analysis and identification of candidate genes involved in anaerobic germination tolerance in rice.
Article in Rice (New York, N.Y.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers, 1 of them a synthesis that pooled it.
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Who cites it
34 citing papers in PubMed, 1 synthesis or guideline pooled it.
- Integrated meta-analysis and transcriptomics pinpoint genomic loci and novel candidate genes associated with submergence tolerance in rice.BMC genomics · 2024Pooled it
- Flooding stress resilience and crop improvement.Plant cell reports · 2026Review
- Harnessing CRISPR-Cas technology to enhance rice resilience under abiotic and biotic stress.Journal of applied genetics · 2026Review
- Bacillus amyloliquefaciens induces autophagy-mediated defense, phytohormonal modulation, and metabolic reprogramming in Oryza sativa to counteract Rhizoctonia solani sheath blight.Plant cell reports · 2026Article
- Identification of candidate genes for heat tolerance in rice by genome-wide association study and transcriptome sequencing.BMC plant biology · 2026Article
- Genome-wide association analysis reveals novel genetic loci involved in rice brown spot resistance.BMC genomics · 2025Article
- Geographic Divergence and Putative Candidate Gene Discovery of Rice Grain Quality in China.Rice (New York, N.Y.) · 2025Article
- Salt stress-responsive transcription factors provide insights to enhance barley improvement: a review.Planta · 2025Review
- Identification of Candidate Genes for Hypoxia Tolerance in Rice by Genome-Wide Association Analysis and Transcriptome Sequencing.Rice (New York, N.Y.) · 2025Article
- Identification of Submergence Tolerance Loci in Dongxiang Wild Rice (DXWR) by Genetic Linkage and Transcriptome Analyses.International journal of molecular sciences · 2025Article
- Molecular mapping and transfer of sheath blight resistance QTLs from PAU-shb8 to cultivated rice PR-121.Molecular genetics and genomics : MGG · 2025Article
- Comparative Transcriptome Analyses Reveal the Mechanisms Underlying Waterlogging Tolerance in Barley.Plants (Basel, Switzerland) · 2024Article
- Understanding anaerobic germination in direct-seeded rice: a genomic mapping approach.BMC plant biology · 2024Article
- Genome wide association study and transcriptome analysis identify candidate genes regulating wheat coleoptile length.Molecular breeding : new strategies in plant improvement · 2024Article
- Exploring the molecular mechanisms of rice blast resistance and advances in breeding for disease tolerance.Molecular biology reports · 2024Review
- Bacillus australimaris protect Gloriosa superba L. against Alternaria alternata infestation.World journal of microbiology & biotechnology · 2024Article
- Enhancing Coleoptile Length of Rice Seeds under Submergence throughPlants (Basel, Switzerland) · 2024Article
- Oschib1 gene encoding a GH18 chitinase confers resistance against sheath blight disease of rice caused by Rhizoctonia solani AG1-IA.Plant molecular biology · 2024Article
- Genetic factors underlying anaerobic germination in rice: Genome-wide association study and transcriptomic analysis.The plant genome · 2024Article
- Identification and Regulation of Hypoxia-Tolerant and Germination-Related Genes in Rice.International journal of molecular sciences · 2024Review
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Authors and funding
12 authors.
Funding
Abstract
backgroundIn Asian rice production, an increasing number of countries now choose the direct seeding mode because of rising costs, labour shortages and water shortages. The ability of rice seeds to undergo anaerobic germination (AG) plays an important role in the success of direct seeding.
resultsIn this study, we used 2,123,725 single nucleotide polymorphism (SNP) markers based on resequencing to conduct a dynamic genome-wide association study (GWAS) of coleoptile length (CL) and coleoptile diameter (CD) in 209 natural rice populations. A total of 26 SNP loci were detected in these two phenotypes, of which 5 overlapped with previously reported loci (S1_ 39674301, S6_ 20797781, S7_ 18722403, S8_ 9946213, S11_ 19165397), and two sites were detected repeatedly at different time points (S3_ 24689629 and S5_ 27918754). We suggest that these 7 loci (-log
conclusionThe four novel candidate genes were associated with gibberellin (GA) and abscisic acid (ABA) regulation and cell wall metabolism under oxygen-deficiency conditions and promoted coleoptile elongation while avoiding adverse effects, allowing the coleoptile to obtain oxygen, escape the low-oxygen environment and germinate rapidly. The results of this study improve our understanding of the genetic basis of AG in rice seeds, which is conducive to the selection of flooding-tolerant varieties suitable for direct seeding.
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