Evidence map›Paper›PMID 33409715›Full record

ArticleMolecular biology reports2021

Association of rs12722 COL5A1 with pulmonary tuberculosis: a preliminary case-control study in a Kazakhstani population.

Sanzhar Zhetkenev, Ayauly Khassan, Armanay Khamzina, Alpamys Issanov, Byron Crape, Ainur Akilzhanova, Dauren Yerezhepov, Ulan Kozhamkulov, Chee Kai Chan

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Article in Molecular biology reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.5field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Sanzhar ZhetkenevSchool of Medicine, Nazarbayev University, Nur-Sultan city, Kazakhstan.
Ayauly KhassanSchool of Medicine, Nazarbayev University, Nur-Sultan city, Kazakhstan.
Armanay KhamzinaSchool of Medicine, Nazarbayev University, Nur-Sultan city, Kazakhstan.
Alpamys IssanovSchool of Medicine, Nazarbayev University, Nur-Sultan city, Kazakhstan.
Byron CrapeSchool of Medicine, Nazarbayev University, Nur-Sultan city, Kazakhstan.
Ainur AkilzhanovaLaboratory of Genomic and Personalized Medicine, National Laboratory Astana, Nazarbayev University, Nur-Sultan city, Kazakhstan.
Dauren YerezhepovLaboratory of Genomic and Personalized Medicine, National Laboratory Astana, Nazarbayev University, Nur-Sultan city, Kazakhstan.
Ulan KozhamkulovLaboratory of Genomic and Personalized Medicine, National Laboratory Astana, Nazarbayev University, Nur-Sultan city, Kazakhstan. ulan.kozhamkulov@nu.edu.kz.ORCID http://orcid.org/0000-0002-9782-7631
Chee Kai ChanSchool of Medicine, Nazarbayev University, Nur-Sultan city, Kazakhstan. chee.chan@nu.edu.kz.ORCID https://orcid.org/0000-0002-8981-7564
Nazarbayev University · KZ

Funding

Ministry of Education and Science of the Republic of Kazakhstan no. АР05134737, AP05136106
6 · The paper itself

Abstract

Lung cavitation is the classic hallmark of TB, which facilitates the disease development and transmission. It involves the degradation of lung parenchyma which is mainly made up of collagen fibers by metalloproteinases (MMPs) produced by activated monocyte-derived cells, neutrophils and stromal cells. The following population-based preliminary case-control study of adults with TB (50) and controls (112) without TB was used to investigate possible association between rs1800012 in COL1A1, rs12722 in COL5A1 genes and pulmonary TB in Kazakhstan. We examined 162 samples (50 cases and 112 controls) to study the associations between TB disease status and demographic variables along with single nucleotide polymorphisms related to COLA1 and COL5A1. The unadjusted χ2 and multivariable logistic regression was performed to find out relationships between SNP and other predictors. Preliminary findings suggest that there is a statistically significant association of age (AOR = 0.97, 95% CI:0.94-0.99, p value = 0.049), social status (AOR = 2.41, 95% CI:1.16-5.02, p value = 0.018), HIV status (AOR = 7.12, 95% CI:1.90-26.7, p value = 0.004) and heterozygous rs12722 SNP (AOR = 2.47, 95% CI:1.17-5.19, p value = 0.018) polymorphism of COL5A1 gene with TB susceptibility. The association of collagen genes with TB pathogenesis indicates that anti TB programs can include development of new drug regimens that include MMP inhibitors which has been found to be helpful in collagen remodeling and repair. Therapeutic targeting of MMPs will prevent extracellular matrix and collagen degradation and granuloma maturation.

Indexed as

Polymorphism, Single NucleotideAdultAge FactorsAllelesCase-Control StudiesCoinfectionCollagen Type ICollagen Type I, alpha 1 ChainCollagen Type VFemaleGene ExpressionGene FrequencyGenotypeHeterozygoteHIVHIV InfectionsCOL5A1 protein, humanCollagen Type ICollagen Type I, alpha 1 ChainCollagen Type VCOL5A1KazakhstanMycobacterium tuberculosisPolymorphismSNPsTB

Identifiers

PMID33409715
OpenAlexW3120514382

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.