ArticleVirus evolution2020
Novel NGS pipeline for virus discovery from a wide spectrum of hosts and sample types.
Article in Virus evolution, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.
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Who cites it
34 citing papers in PubMed.
- Virome analysis reveals ORF7 sequences of type 2 porcine respiratory and reproductive syndrome virus (PRRSV) for the first time in a rodent host (One health (Amsterdam, Netherlands) · 2026Article
- Detection and genetic characterization of alphacoronaviruses in co-roosting bat species, southeastern Kenya.PLoS neglected tropical diseases · 2025Article
- Discovery and characterization of Sager Creek virus, a new orthohantavirus in prairie voles (Microtus ochrogaster).Npj viruses · 2025Article
- Isolation and genetic characterization of a novel Kevo orbivirus and a strain of Mobuck virus fromThe Journal of general virology · 2025Article
- RNA sequencing analysis of viromes ofProceedings of the National Academy of Sciences of the United States of America · 2025Article
- Co-infection of canine parvovirus and circovirus in fatal gastroenteritis outbreak among service dogs in Kazakhstan, 2023.Frontiers in cellular and infection microbiology · 2025Article
- Detection of divergent Orthohantavirus tulaense provides insight into wide host range and viral evolutionary patterns.Npj viruses · 2024Article
- Complete coding sequence of an Aedes flavivirus strain isolated fromMicrobiology resource announcements · 2024Article
- Entourage: all-in-one sequence analysis software for genome assembly, virus detection, virus discovery, and intrasample variation profiling.BMC bioinformatics · 2024Article
- Evolution and genetic characterization of Seoul virus in wild rats Rattus norvegicus from an urban park in Lyon, France 2020-2022.PLoS neglected tropical diseases · 2024Article
- Epstein-Barr Virus in the Cerebrospinal Fluid and Blood Compartments of Patients With Multiple Sclerosis and Controls.Neurology(R) neuroimmunology & neuroinflammation · 2024Article
- Hecatomb: an integrated software platform for viral metagenomics.GigaScience · 2024Article
- Novel Ozark Orthohantavirus in Hispid Cotton Rats (Sigmodon hispidus), Arkansas, USA.Emerging infectious diseases · 2023Article
- Reptarenavirus S Segment RNA Levels Correlate with the Presence of Inclusion Bodies and the Number of L Segments in Snakes with Reptarenavirus Infection-Lessons Learned from a Large Breeding Colony.Microbiology spectrum · 2023Article
- Article
- Enhanced Viral Metagenomics with Lazypipe 2.Viruses · 2023Article
- NanoViromics: long-read sequencing of dsRNA for plant virus and viroid rapid detection.Frontiers in microbiology · 2023Article
- Serum Virome of Southern Beaufort Sea polar bears (Conservation physiology · 2023Article
- Novel Virus Identification through Metagenomics: A Systematic Review.Life (Basel, Switzerland) · 2022Review
- Boid Inclusion Body Disease Is Also a Disease of Wild Boa Constrictors.Microbiology spectrum · 2022Article
Corrections and comments
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Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The study of the microbiome data holds great potential for elucidating the biological and metabolic functioning of living organisms and their role in the environment. Metagenomic analyses have shown that humans, along with for example, domestic animals, wildlife and arthropods, are colonized by an immense community of viruses. The current Coronavirus pandemic (COVID-19) heightens the need to rapidly detect previously unknown viruses in an unbiased way. The increasing availability of metagenomic data in this era of next-generation sequencing (NGS), along with increasingly affordable sequencing technologies, highlight the need for reliable and comprehensive methods to manage such data. In this article, we present a novel bioinformatics pipeline called LAZYPIPE for identifying both previously known and novel viruses in host associated or environmental samples and give examples of virus discovery based on it. LAZYPIPE is a Unix-based pipeline for automated assembling and taxonomic profiling of NGS libraries implemented as a collection of C++, Perl, and R scripts.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.