Evidence map›Paper›PMID 33408717›Full record

ArticleFrontiers in immunology2020

Six Immune Associated Genes Construct Prognostic Model Evaluate Low-Grade Glioma.

Yin Qiu Tan, Yun Tao Li, Teng Feng Yan, Yang Xu, Bao Hui Liu, Ji An Yang, Xue Yang, Qian Xue Chen, Hong Bo Zhang

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed, 1 pooled it
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 1 synthesis or guideline pooled it, 62 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Yin Qiu TanDepartment of Neurosurgery, Renmin Hospital of Wuhan University, Wuhan, China.
Yun Tao LiDepartment of Neurosurgery, Renmin Hospital of Wuhan University, Wuhan, China.
Teng Feng YanDepartment of Neurosurgery, Renmin Hospital of Wuhan University, Wuhan, China.
Yang XuDepartment of Neurosurgery, Renmin Hospital of Wuhan University, Wuhan, China.
Bao Hui LiuDepartment of Neurosurgery, Renmin Hospital of Wuhan University, Wuhan, China.
Ji An YangDepartment of Neurosurgery, Renmin Hospital of Wuhan University, Wuhan, China.
Xue YangDepartment of Neurosurgery, Renmin Hospital of Wuhan University, Wuhan, China.
Qian Xue ChenDepartment of Neurosurgery, Renmin Hospital of Wuhan University, Wuhan, China.
Hong Bo ZhangDepartment of Neurosurgery, Zhujiang Hospital, Southern Medical University, Guangzhou, China.
Renmin Hospital of Wuhan University · CNWuhan University · CNZhujiang Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: The immunotherapy of Glioma has always been a research hotspot. Although tumor associated microglia/macrophages (TAMs) proves to be important in glioma progression and drug resistance, our knowledge about how TAMs influence glioma remains unclear. The relationship between glioma and TAMs still needs further study. Methods: We collected the data of TAMs in glioma from NCBI Gene Expression Omnibus (GEO) that included 20 glioma samples and 15 control samples from four datasets. Six genes were screened from the Differential Expression Gene through Gene ontology (GO) analysis, Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis, protein-protein interaction (PPI) network and single-cell sequencing analysis. A risk score was then constructed based on the six genes and patients' overall survival rates of 669 patients from The Cancer Genome Atlas (TCGA). The efficacy of the risk score in prognosis and prediction was verified in Chinese Glioma Genome Atlas (CGGA). Results: Six genes, including CD163, FPR3, LPAR5, P2ry12, PLAUR, SIGLEC1, that participate in signal transduction and plasma membrane were selected. Half of them, like CD163, FPR3, SIGLEC1, were mainly expression in M2 macrophages. FPR3 and SIGLEC1 were high expression genes in glioma associated with grades and IDH status. The overall survival rates of the high risk score group was significantly lower than that of the low risk score group, especially in LGG. Conclusion: Joint usage of the 6 candidate genes may be an effective method to diagnose and evaluate the prognosis of glioma, especially in Low-grade glioma (LGG).

Indexed as

Gene Expression ProfilingTranscriptomeBiomarkers, TumorBrain NeoplasmsCase-Control StudiesDatabases, GeneticGliomaHumansMacrophagesNeoplasm GradingPhenotypePredictive Value of TestsReceptors, Formyl PeptideRNA-SeqSialic Acid Binding Ig-like Lectin 1Single-Cell AnalysisBiomarkers, TumorFPR3 protein, humanReceptors, Formyl PeptideSialic Acid Binding Ig-like Lectin 1SIGLEC1 protein, humanbiomarkergliomaprognosissingle cell sequencetumor associated macrophage

Identifiers

PMID33408717
PMCPMC7779629
OpenAlexW3117948387

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.