Evidence map›Paper›PMID 33407814›Full record

ArticleArthritis research & therapy2021

Computer vision applied to dual-energy computed tomography images for precise calcinosis cutis quantification in patients with systemic sclerosis.

Anita C Chandrasekaran, Zhicheng Fu, Reid Kraniski, F Perry Wilson, Shannon Teaw, Michelle Cheng, Annie Wang, Shangping Ren, Imran M Omar, Monique E Hinchcliff

Open access · goldAbstract read
In one paragraph

Article in Arthritis research & therapy, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
3.3field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Review
  3. Outcome Measures in Dystrophic Calcinosis Cutis: A Systematic Review.JID innovations : skin science from molecules to population health · 2025
    Review
  4. Review
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 2 countries.

Anita C ChandrasekaranYale School of Medicine, Section of Rheumatology, Allergy & Immunology, The Anlyan Center, 300 Cedar Street, PO BOX 208031, New Haven, CT, 06520, USA.
Zhicheng FuDepartment of Computer Science, Illinois Institute of Technology, 10 W 31st St, Chicago, IL, 60616, USA.
Reid KraniskiDepartment of Radiology, Yale School of Medicine, 330 Cedar St, New Haven, CT, 06520, USA.
F Perry WilsonClinical and Translational Research Accelerator, Department of Medicine, Yale School of Medicine, Temple Medical Center, 60 Temple Street Suite 6C, New Haven, CT, 06510, USA.
Shannon TeawYale School of Medicine, Section of Rheumatology, Allergy & Immunology, The Anlyan Center, 300 Cedar Street, PO BOX 208031, New Haven, CT, 06520, USA.
Michelle ChengYale School of Medicine, Section of Rheumatology, Allergy & Immunology, The Anlyan Center, 300 Cedar Street, PO BOX 208031, New Haven, CT, 06520, USA.
Annie WangDepartment of Radiology, Yale School of Medicine, 330 Cedar St, New Haven, CT, 06520, USA.
Shangping RenDepartment of Computer Science, Illinois Institute of Technology, 10 W 31st St, Chicago, IL, 60616, USA.
Imran M OmarDepartment of Radiology, Northwestern University Feinberg School of Medicine, 676 N St Clair St, Chicago, IL, 60611, USA.
Monique E HinchcliffYale School of Medicine, Section of Rheumatology, Allergy & Immunology, The Anlyan Center, 300 Cedar Street, PO BOX 208031, New Haven, CT, 06520, USA. Monique.hinchcliff@yale.edu.ORCID 0000-0002-8652-9890
Northwestern University · USYale University · USIllinois Institute of Technology · USMotorola (South Korea) · KRTemple University · US

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Renal Physiology and Phenotyping CoreP30DK079310 · NIDDK · YALE UNIVERSITY · PI PREISIG, PATRICIA A · 2008 to 2022
$16.8M
Optimizing Electronic Alerts for Acute Kidney InjuryR01DK113191 · NIDDK · YALE UNIVERSITY · PI WILSON, FRANCIS PERRY · 2018 to 2022
$3.1M
Pathogenic Wnt-beta catenin target genes in macrophages and fibrosisR01AR073270 · NIAMS · YALE UNIVERSITY · PI HINCHCLIFF, MONIQUE EVANGELINE · 2019 to 2023
$2.6M
Predictive Ability of Gene Expression Signatures In Skin as SSc BiomarkersK23AR059763 · NIAMS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI HINCHCLIFF, MONIQUE EVANGELINE · 2013 to 2015
$390k
NCATS NIH HHS UL1 TR001863NIAMS NIH HHS AR059763NIAMS NIH HHS AR073270NIDDK NIH HHS P30 DK079310NIDDK NIH HHS P30DK079310NIDDK NIH HHS R01DK113191
6 · The paper itself

Abstract

backgroundAlthough treatments have been proposed for calcinosis cutis (CC) in patients with systemic sclerosis (SSc), a standardized and validated method for CC burden quantification is necessary to enable valid clinical trials. We tested the hypothesis that computer vision applied to dual-energy computed tomography (DECT) finger images is a useful approach for precise and accurate CC quantification in SSc patients.

methodsDe-identified 2-dimensional (2D) DECT images from SSc patients with clinically evident lesser finger CC lesions were obtained. An expert musculoskeletal radiologist confirmed accurate manual segmentation (subtraction) of the phalanges for each image as a gold standard, and a U-Net Convolutional Neural Network (CNN) computer vision model for segmentation of healthy phalanges was developed and tested. A validation study was performed in an independent dataset whereby two independent radiologists manually measured the longest length and perpendicular short axis of each lesion and then calculated an estimated area by assuming the lesion was elliptical using the formula long axis/2 × short axis/2 × π, and a computer scientist used a region growing technique to calculate the area of CC lesions. Spearman's correlation coefficient, Lin's concordance correlation coefficient with 95% confidence intervals (CI), and a Bland-Altman plot (Stata V 15.1, College Station, TX) were used to test for equivalence between the radiologists' and the CNN algorithm-generated area estimates.

resultsForty de-identified 2D DECT images from SSc patients with clinically evident finger CC lesions were obtained and divided into training (N = 30 with image rotation × 3 to expand the set to N = 120) and test sets (N = 10). In the training set, five hundred epochs (iterations) were required to train the CNN algorithm to segment phalanges from adjacent CC, and accurate segmentation was evaluated using the ten held-out images. To test model performance, CC lesional area estimates calculated by two independent radiologists and a computer scientist were compared (radiologist 1 vs. radiologist 2 and radiologist 1 vs. computer vision approach) using an independent test dataset comprised of 31 images (8 index finger and 23 other fingers). For the two radiologists', and the radiologist vs. computer vision measurements, Spearman's rho was 0.91 and 0.94, respectively, both p < 0.0001; Lin's concordance correlation coefficient was 0.91 (95% CI 0.85-0.98, p < 0.001) and 0.95 (95% CI 0.91-0.99, p < 0.001); and Bland-Altman plots demonstrated a mean difference between radiologist vs. radiologist, and radiologist vs. computer vision area estimates of - 0.5 mm

conclusionsWe demonstrate that CNN quantification has a high degree of correlation with expert radiologist measurement of finger CC area measurements. Future work will include segmentation of 3-dimensional (3D) images for volumetric and density quantification, as well as validation in larger, independent cohorts.

Indexed as

CalcinosisScleroderma, SystemicComputersHumansImage Processing, Computer-AssistedNeural Networks, ComputerTomographyArtificial intelligenceCalcinosis cutisComputer visionConvolutional neural networks (CNN)Dystrophic calcificationsMedical image analysisSclerodermaSystemic sclerosisU-Net

Identifiers

PMID33407814
PMCPMC7788847
OpenAlexW3119182290

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.