ArticleBMC plant biology2021
Genomic survey sequencing, development and characterization of single- and multi-locus genomic SSR markers of Elymus sibiricus L.
Article in BMC plant biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.
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25 citing papers in PubMed.
- Genomic basis of local adaptation in Elymus sibiricus revealed by genotype-environment associations and common garden experiments.BMC plant biology · 2026Article
- Structural characterization of the plastid genome and comparative mitochondrial genomics of Eupatorium lindleyanum (Asteraceae): evolutionary dynamics and phylogenetic insights.BMC plant biology · 2026Article
- Genomic Characterization and Phylogenetic Relationships ofAnimals : an open access journal from MDPI · 2026Article
- Whole-genome survey information revealed the genome characteristics, mitochondrial genome diversity and evolutionary patterns of Stomatopoda species.BMC genomics · 2025Article
- The Genome Survey Analysis of Female and MaleGenes · 2025Article
- De novo SSR markers development and genetic diversity assessment inPhysiology and molecular biology of plants : an international journal of functional plant biology · 2025Article
- Genome-Wide Exploration and Characterization of theInternational journal of molecular sciences · 2025Article
- Assembly and analysis of the complete mitochondrial genome ofFrontiers in plant science · 2025Article
- Genetic Diversity and Fingerprinting of 231 Mango Germplasm Using Genome SSR Markers.International journal of molecular sciences · 2024Article
- Chromosome-scale assembly of the wild cereal relative Elymus sibiricus.Scientific data · 2024Article
- Extensive transcriptome data providing great efficacy in genetic research and adaptive gene discovery: a case study ofFrontiers in plant science · 2024Article
- Phylogeographic analysis reveals extensive genetic variation of native grassFrontiers in plant science · 2024Article
- Comprehensive prediction of potential spatiotemporal distribution patterns, priority planting regions, and introduction adaptability ofFrontiers in plant science · 2024Article
- Multichromosomal mitochondrial genome of Punica granatum: comparative evolutionary analysis and gene transformation from chloroplast genomes.BMC plant biology · 2023Article
- Integrating Full-Length Transcriptome and RNA Sequencing of Siberian Wildrye (Plants (Basel, Switzerland) · 2023Article
- Genome survey sequencing-based SSR marker development and their validation in Dendrocalamus longispathus.Functional & integrative genomics · 2023Article
- Characterization and Application of EST-SSR Markers Developed from Transcriptome Sequences inGenes · 2023Article
- Assembly and comparative analysis of the complete mitochondrial genome of Isopyrum anemonoides (Ranunculaceae).PloS one · 2023Article
- Article
- Comparative Metabolomic Studies of Siberian Wildrye (International journal of molecular sciences · 2022Article
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10 authors.
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Abstract
backgroundSiberian wildrye (Elymus sibiricus L.) attracts considerable interest for grassland establishment and pasture recovery in the Qinghai-Tibet Plateau (QTP) due to its excellence in strong stress tolerance, high nutritional value and ease to cultivate. However, the lack of genomic information of E. sibiricus hampers its genetics study and breeding process.
resultsIn this study, we performed a genome survey and developed a set of SSR markers for E. sibiricus based on Next-generation sequencing (NGS). We generated 469.17 Gb clean sequence which is 58.64× of the 6.86 Gb estimated genome size. We assembled a draft genome of 4.34 Gb which has 73.23% repetitive elements, a heterozygosity ratio of 0.01% and GC content of 45.68%. Based on the gnomic sequences we identified 67,833 SSR loci and from which four hundred were randomly selected to develop markers. Finally, 30 markers exhibited polymorphism between accessions and ten were identified as single-locus SSR. These newly developed markers along with previously reported 30 ones were applied to analyze genetic polymorphism among 27 wild E. sibiricus accessions. We found that single-locus SSRs are superior to multi-loci SSRs in effectiveness.
conclusionsThis study provided insights into further whole genome sequencing of E. sibiricus in strategy selection. The novel developed SSR markers will facilitate genetics study and breeding for Elymus species.
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