Evidence map›Paper›PMID 33407123›Full record

ArticleBMC microbiology2021

The type VI secretion system of Xanthomonas phaseoli pv. manihotis is involved in virulence and in vitro motility.

Nathaly Andrea Montenegro Benavides, Alejandro Alvarez B, Mario L Arrieta-Ortiz, Luis Miguel Rodriguez-R, David Botero, Javier Felipe Tabima, Luisa Castiblanco, Cesar Trujillo, Silvia Restrepo, Adriana Bernal

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
5.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Biology · 2025
    Review
  3. TheISME communications · 2025
    Article
  4. Article
  5. Review
  6. Review
  7. Article
  8. Two novelFrontiers in microbiology · 2024
    Article
  9. Article
  10. Antagonistic transcriptome profile reveals potential mechanisms of action onFrontiers in cellular and infection microbiology · 2023
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 4 countries.

Nathaly Andrea Montenegro BenavidesDepartment of Biological Sciences, Universidad de los Andes, Bogotá, Colombia.
Alejandro Alvarez BDepartment of Biological Sciences, Universidad de los Andes, Bogotá, Colombia.
Mario L Arrieta-OrtizInstitute for Systems Biology, Seattle, WA, USA.
Luis Miguel Rodriguez-RDepartment of Microbiology and Digital Science Center (DiSC), University of Innsbruck, Innsbruck, Tyrol, Austria.
David BoteroDepartment of Biological Sciences, Universidad de los Andes, Bogotá, Colombia.
Javier Felipe TabimaBotany and Plant Pathology Department, Oregon State University, Corvallis, OR, USA.
Luisa CastiblancoDepartment of Biological Sciences, Universidad de los Andes, Bogotá, Colombia.
Cesar TrujilloDepartment of Biological Sciences, Universidad de los Andes, Bogotá, Colombia.
Silvia RestrepoDepartment of Biological Sciences, Universidad de los Andes, Bogotá, Colombia.
Adriana BernalDepartment of Biological Sciences, Universidad de los Andes, Bogotá, Colombia. abernal@uniandes.edu.co.ORCID 0000-0002-3557-697X
Universidad de Los Andes · COInstitute for Systems Biology · USOregon State University · USUniversität Innsbruck · AT

Funding

Departamento Administrativo de Ciencia, Tecnología e Innovación 521-2010Facultad de Ciencias, Universidad de los Andes INV-2019-84-1855
6 · The paper itself

Abstract

backgroundThe type VI protein secretion system (T6SS) is important in diverse cellular processes in Gram-negative bacteria, including interactions with other bacteria and with eukaryotic hosts. In this study we analyze the evolution of the T6SS in the genus Xanthomonas and evaluate its importance of the T6SS for virulence and in vitro motility in Xanthomonas phaseoli pv. manihotis (Xpm), the causal agent of bacterial blight in cassava (Manihot esculenta). We delineate the organization of the T6SS gene clusters in Xanthomonas and then characterize proteins of this secretion system in Xpm strain CIO151.

resultsWe describe the presence of three different clusters in the genus Xanthomonas that vary in their organization and degree of synteny between species. Using a gene knockout strategy, we also found that vgrG and hcp are required for maximal aggressiveness of Xpm on cassava plants while clpV is important for both motility and maximal aggressiveness.

conclusionWe characterized the T6SS in 15 different strains in Xanthomonas and our phylogenetic analyses suggest that the T6SS might have been acquired by a very ancient event of horizontal gene transfer and maintained through evolution, hinting at their importance for the adaptation of Xanthomonas to their hosts. Finally, we demonstrated that the T6SS of Xpm is functional, and significantly contributes to virulence and motility. This is the first experimental study that demonstrates the role of the T6SS in the Xpm-cassava interaction and the T6SS organization in the genus Xanthomonas.

Indexed as

Computational BiologyGene Knockout TechniquesGene Transfer, HorizontalMutationPhylogenySequence Analysis, DNAType VI Secretion SystemsVirulenceXanthomonasType VI Secretion SystemsClpV, Xanthomonas, bacterial pathogenesisHcpIcmFType VI secretionVgr

Identifiers

PMID33407123
PMCPMC7788950
OpenAlexW3116212052

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.