Evidence map›Paper›PMID 33407121›Full record

ArticleBMC plant biology2021

Identification and characterization of regulatory pathways involved in early flowering in the new leaves of alfalfa (Medicago sativa L.) by transcriptome analysis.

Dongmei Ma, Bei Liu, Lingqiao Ge, Yinyin Weng, Xiaohui Cao, Fang Liu, Peisheng Mao, Xiqing Ma

Open access · goldAbstract readComparative Study
In one paragraph

Article in BMC plant biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
4.4field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 26 citations in OpenAlex.

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  3. Review
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  5. Transcriptome Responses inPlants (Basel, Switzerland) · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Dongmei MaBreeding Base for State Key Laboratory of Land Degradation and Ecological Restoration in Northwest China/ Ministry of Education Key Laboratory for Restoration and Reconstruction of Degraded Ecosystems in Northwest China, Ningxia University, Yinchuan, 750021, China.
Bei LiuCollege of Grassland Science and Technology, China Agricultural University, Beijing, 100193, China.
Lingqiao GeCollege of Grassland Science and Technology, China Agricultural University, Beijing, 100193, China.
Yinyin WengCollege of Grassland Science and Technology, China Agricultural University, Beijing, 100193, China.
Xiaohui CaoCollege of Grassland Science and Technology, China Agricultural University, Beijing, 100193, China.
Fang LiuNational Animal Husbandry Service, Maizidian Street, North Nongzhan Road, Chaoyang District, Beijing, 100125, China.
Peisheng MaoCollege of Grassland Science and Technology, China Agricultural University, Beijing, 100193, China.
Xiqing MaCollege of Grassland Science and Technology, China Agricultural University, Beijing, 100193, China. ma2016@cau.edu.cn.
China Agricultural University · CNMinistry of Education of the People's Republic of China · CNNational Animal Husbandry Service · CN

Funding

National Basic Research Program of China (973 Program) 2019bbf02022-042National Natural Science Foundation of China 31760698Ningxia agricultural breeding project 2019NYYZ0401Ningxia University first class discipline construction(Ecology)funded project nxylxk2017b06the Fundamental Research Funds for the Central Universities 2018QC144
6 · The paper itself

Abstract

backgroundAlfalfa (Medicago sativa L.) is a perennial legume extensively planted throughout the world as a high nutritive value livestock forage. Flowering time is an important agronomic trait that contributes to the production of alfalfa hay and seeds. However, the underlying molecular mechanisms of flowering time regulation in alfalfa are not well understood.

resultsIn this study, an early-flowering alfalfa genotype 80 and a late-flowering alfalfa genotype 195 were characterized for the flowering phenotype. Our analysis revealed that the lower jasmonate (JA) content in new leaves and the downregulation of JA biosynthetic genes (i.e. lipoxygenase, the 12-oxophytodienoate reductase-like protein, and salicylic acid carboxyl methyltransferase) may play essential roles in the early-flowering phenotype of genotype 80. Further research indicated that genes encode pathogenesis-related proteins [e.g. leucine rich repeat (LRR) family proteins, receptor-like proteins, and toll-interleukin-like receptor (TIR)-nucleotide-binding site (NBS)-LRR class proteins] and members of the signaling receptor kinase family [LRR proteins, kinases domain of unknown function 26 (DUF26) and wheat leucine-rich repeat receptor-like kinase10 (LRK10)-like kinases] are related to early flowering in alfalfa. Additionally, those involved in secondary metabolism (2-oxoglutarate/Fe (II)-dependent dioxygenases and UDP-glycosyltransferase) and the proteasome degradation pathway [really interesting new gene (RING)/U-box superfamily proteins and F-box family proteins] are also related to early flowering in alfalfa.

conclusionsIntegrated phenotypical, physiological, and transcriptomic analyses demonstrate that hormone biosynthesis and signaling pathways, pathogenesis-related genes, signaling receptor kinase family genes, secondary metabolism genes, and proteasome degradation pathway genes are responsible for the early flowering phenotype in alfalfa. This will provide new insights into future studies of flowering time in alfalfa and inform genetic improvement strategies for optimizing this important trait.

Indexed as

Crops, AgriculturalCyclopentanesFlowersGene Expression ProfilingGene Expression Regulation, PlantGenetic VariationGenotypeMedicago sativaOxylipinsPhenotypePlant Growth RegulatorsPlant LeavesCyclopentanesOxylipinsPlant Growth RegulatorsAlfalfaFlowering timeHormoneNew leavesTranscriptome

Identifiers

PMID33407121
PMCPMC7788926
OpenAlexW3119642022

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.