ArticleBMC genomics2021
Genome-wide association analysis reveals genetic variations and candidate genes associated with salt tolerance related traits in Gossypium hirsutum.
Article in BMC genomics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.
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Who cites it
25 citing papers in PubMed, 49 citations in OpenAlex.
- Comparative effects of mixed saline-alkaline stress on seed germination and early seedling growth in proso millet: the dominant role of alkalinity.Scientific reports · 2026Article
- Integrative Genome-Wide Association and Transcriptome Analyses Identify Candidate Genes for Salt Tolerance During Cotton Germination.Plants (Basel, Switzerland) · 2026Article
- Development of a Liquid-Phased Probe Array for Upland Cotton and Its Application in Cultivar Identification.Genes · 2025Article
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- Salt tolerance characterization and genome-wide association study ofFrontiers in plant science · 2025Article
- A GWAS identified loci and candidate genes associated with fiber quality traits in a new cotton MAGIC population.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Mapping proteomic response to salinity stress tolerance in oil crops: Towards enhanced plant resilience.Journal, genetic engineering & biotechnology · 2024Review
- Understanding of Plant Salt Tolerance Mechanisms and Application to Molecular Breeding.International journal of molecular sciences · 2024Review
- RNA-Seq and WGCNA Analyses Reveal Key Regulatory Modules and Genes for Salt Tolerance in Cotton.Genes · 2024Article
- Integrative physiology and transcriptome sequencing reveal differences between G. hirsutum and G. barbadense in response to salt stress and the identification of key salt tolerance genes.BMC plant biology · 2024Article
- Transcriptome Expression Profiling Reveals the Molecular Response to Salt Stress inPlants (Basel, Switzerland) · 2024Article
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- Review
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- Application of RNA sequencing to understand the response of rice seedlings to salt-alkali stress.BMC genomics · 2023Article
- Noninvasive Detection of Salt Stress in Cotton Seedlings by Combining Multicolor Fluorescence-Multispectral Reflectance Imaging with EfficientNet-OB2.Plant phenomics (Washington, D.C.) · 2023Article
- Genome-wide association study of fiber yield-related traits uncovers the novel genomic regions and candidate genes in Indian upland cotton (Frontiers in plant science · 2023Article
- Transcriptomic Analysis Provides Insight into the ROS Scavenging System and Regulatory Mechanisms inInternational journal of molecular sciences · 2022Article
- Identification of a Negative Regulator for Salt Tolerance at Seedling Stage via a Genome-Wide Association Study of Thai Rice Populations.International journal of molecular sciences · 2022Article
Corrections and comments
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Authors and funding
7 authors at 2 institutions in 2 countries.
Funding
Abstract
backgroundCotton is more resistant to salt and drought stresses as compared to other field crops, which makes itself as a pioneer industrial crop in saline-alkali lands. However, abiotic stresses still negatively affect its growth and development significantly. It is therefore important to breed salt tolerance varieties which can help accelerate the improvement of cotton production. The development of molecular markers linked to causal genes has provided an effective and efficient approach for improving salt tolerance.
resultsIn this study, a genome-wide association study (GWAS) of salt tolerance related traits at seedling stage was performed based on 2 years of phenotype identification for 217 representative upland cotton cultivars by genotyping-by-sequencing (GBS) platform. A total of 51,060 single nucleotide polymorphisms (SNPs) unevenly distributed among 26 chromosomes were screened across the cotton cultivars, and 25 associations with 27 SNPs scattered over 12 chromosomes were detected significantly (-log
conclusionsThese results provided important genetic variations and candidate genes for accelerating the improvement of salt tolerance in cotton.
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