Evidence map›Paper›PMID 33406854›Full record

ArticleArteriosclerosis, thrombosis, and vascular biology2021

ODC (Ornithine Decarboxylase)-Dependent Putrescine Synthesis Maintains MerTK (MER Tyrosine-Protein Kinase) Expression to Drive Resolution.

Arif Yurdagul, Na Kong, Brennan D Gerlach, Xiaobo Wang, Patrick Ampomah, George Kuriakose, Wei Tao, Jinjun Shi, Ira Tabas

Open access · bronzeAbstract read
In one paragraph

Article in Arteriosclerosis, thrombosis, and vascular biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
2.9field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 49 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Anti-Atherogenic Mechanisms and Therapies.Current atherosclerosis reports · 2025
    Review
  10. Review
  11. Article
  12. Article
  13. Review
  14. Article
  15. Efferocytosis in atherosclerosis.Nature reviews. Cardiology · 2024
    Review
  16. Article
  17. Article
  18. Macrophage WDFY3, a protector against autoimmunity.bioRxiv : the preprint server for biology · 2024
    Article
  19. Article
  20. Mechanism of efferocytosis in atherosclerosis.Journal of molecular medicine (Berlin, Germany) · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Arif YurdagulDepartment of Medicine (A.Y., B.D.G., X.W., P.A., G.K., I.T.), Columbia University Irving Medical Center, New York, NY.
Na KongCenter for Nanomedicine and Department of Anesthesiology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA (N.K., W.T., J.S.).
Brennan D GerlachDepartment of Medicine (A.Y., B.D.G., X.W., P.A., G.K., I.T.), Columbia University Irving Medical Center, New York, NY.
Xiaobo WangDepartment of Medicine (A.Y., B.D.G., X.W., P.A., G.K., I.T.), Columbia University Irving Medical Center, New York, NY.
Patrick AmpomahDepartment of Medicine (A.Y., B.D.G., X.W., P.A., G.K., I.T.), Columbia University Irving Medical Center, New York, NY.
George KuriakoseDepartment of Medicine (A.Y., B.D.G., X.W., P.A., G.K., I.T.), Columbia University Irving Medical Center, New York, NY.
Wei TaoCenter for Nanomedicine and Department of Anesthesiology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA (N.K., W.T., J.S.).
Jinjun ShiCenter for Nanomedicine and Department of Anesthesiology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA (N.K., W.T., J.S.).
Ira TabasDepartment of Medicine (A.Y., B.D.G., X.W., P.A., G.K., I.T.), Columbia University Irving Medical Center, New York, NY.
Columbia University Irving Medical Center · USBrigham and Women's Hospital · US

Funding

Clinical and Translational Science AwardUL1TR001873 · NCATS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI REILLY, MUREDACH P · 2016 to 2025
$99.0M
Translational Biomarker Analytical Core (TBAC)P30DK063608 · NIDDK · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI DOMENICO ACCILI · 2003 to 2026
$36.7M
TTC39B in obesity and atherosclerosisP01HL087123 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI TALL, ALAN RICHARD · 2007 to 2022
$31.2M
POSTDOCTORAL TRAINING IN ARTERIOSCLEROSIS RESEARCHT32HL007343 · NHLBI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI HENRY N GINSBERG, Muredach P Reilly · 1985 to 2026
$12.7M
NRSA Training CoreTL1TR001875 · NCATS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SPANN, MARISA N, TAYLOR, JACQUELYN Y · 2016 to 2025
$8.9M
A Mechanistic and Translational Research Program Linking Impaired Resolution, Defective Efferocytosis, and Clonal Hematopoiesis to the Formation of Clinically Dangerous Atherosclerotic PlaquesR35HL145228 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI TABAS, IRA A · 2019 to 2025
$6.8M
Enhancing Inflammation Resolution in Atherosclerosis via Targeted Nanoparticle-Mediated Delivery of BiologicsR01HL127464 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SHI, JINJUN, TABAS, IRA A · 2016 to 2019
$3.0M
Long-Acting RNAi Therapy for Atherosclerosis and Insulin ResistanceR01HL159012 · NHLBI · BRIGHAM AND WOMEN'S HOSPITAL · PI SHI, JINJUN · 2021 to 2024
$2.7M
"MerTK Cleavage and Signaling in Atherosclerosis"R01HL132412 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI TABAS, IRA A · 2016 to 2018
$1.5M
BD Biosciences InfluxS10OD020056 · OD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SNOECK, HANS-WILLEM E · 2015 to 2015
$600k
Processing of Apoptotic Cell-Derived Cargo by Macrophages Continues Efferocytosis and Drives Atherosclerosis RegressionK99HL145131 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI YURDAGUL, ARIF · 2019 to 2020
$335k
NCATS NIH HHS TL1 TR001875NCATS NIH HHS UL1 TR001873NHLBI NIH HHS K99 HL145131NHLBI NIH HHS P01 HL087123NHLBI NIH HHS R01 HL127464NHLBI NIH HHS R01 HL132412NHLBI NIH HHS R01 HL159012NHLBI NIH HHS R35 HL145228NHLBI NIH HHS T32 HL007343NIDDK NIH HHS P30 DK063608NIH HHS S10 OD020056
6 · The paper itself

Abstract

objectiveODC (ornithine decarboxylase)-dependent putrescine synthesis promotes the successive clearance of apoptotic cells (ACs) by macrophages, contributing to inflammation resolution. However, it remains unknown whether ODC is required for other arms of the resolution program. Approach and Results: RNA sequencing of ODC-deficient macrophages exposed to ACs showed increases in mRNAs associated with heightened inflammation and decreases in mRNAs related to resolution and repair compared with WT (wild type) macrophages. In zymosan peritonitis, myeloid ODC deletion led to delayed clearance of neutrophils and a decrease in the proresolving cytokine, IL (interleukin)-10. Nanoparticle-mediated silencing of macrophage ODC in a model of atherosclerosis regression lowered IL-10 expression, decreased efferocytosis, enhanced necrotic core area, and reduced fibrous cap thickness. Mechanistically, ODC deletion lowered basal expression of MerTK (MER tyrosine-protein kinase)-an AC receptor-via a histone methylation-dependent transcriptional mechanism. Owing to lower basal MerTK, subsequent exposure to ACs resulted in lower MerTK-Erk (extracellular signal-regulated kinase) 1/2-dependent IL-10 production. Putrescine treatment of ODC-deficient macrophages restored the expression of both MerTK and AC-induced IL-10.

conclusionsThese findings demonstrate that ODC-dependent putrescine synthesis in macrophages maintains a basal level of MerTK expression needed to optimally resolve inflammation upon subsequent AC exposure. Graphic Abstract: A graphic abstract is available for this article.

Indexed as

AnimalsApoptosisAtherosclerosisCells, Culturedc-Mer Tyrosine KinaseGene Knockout TechniquesHistonesInflammationInterleukin-10MacrophagesMAP Kinase Signaling SystemMiceMice, KnockoutModels, BiologicalOrnithine DecarboxylasePhagocytosisc-Mer Tyrosine KinaseHistonesIL10 protein, mouseInterleukin-10Mertk protein, mouseOrnithine DecarboxylasePutrescineatherosclerosishistonesinflammationmacrophagesputrescine

Identifiers

PMID33406854
PMCPMC8034502
OpenAlexW3119736826

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.