Evidence map›Paper›PMID 33406541›Full record

ArticleApplied clinical informatics2021

Coronary Artery Disease Phenotype Detection in an Academic Hospital System Setting.

Amy Joseph, Charles Mullett, Christa Lilly, Matthew Armistead, Harold J Cox, Michael Denney, Misha Varma, David Rich, Donald A Adjeroh, Gianfranco Doretto and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Applied clinical informatics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.5field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Amy JosephDepartment of Pediatrics, School of Medicine, West Virginia University, Morgantown, West Virginia, United States.
Charles MullettDepartment of Pediatrics, School of Medicine, West Virginia University, Morgantown, West Virginia, United States.
Christa LillyDepartment of Biostatistics, School of Public Health, West Virginia University, Morgantown, West Virginia, United States.
Matthew ArmisteadWest Virginia Clinical and Translational Science Institute, West Virginia University, Morgantown, West Virginia, United States.
Harold J CoxWest Virginia Clinical and Translational Science Institute, West Virginia University, Morgantown, West Virginia, United States.
Michael DenneyWest Virginia Clinical and Translational Science Institute, West Virginia University, Morgantown, West Virginia, United States.
Misha VarmaDepartment of Pediatrics, School of Medicine, West Virginia University, Morgantown, West Virginia, United States.
David RichWest Virginia University Hospital System, Morgantown, West Virginia, United States.
Donald A AdjerohLane Department of Computer Science and Electrical Engineering, Benjamin M. Statler College of Engineering and Mineral Resources, West Virginia University, Morgantown, West Virginia, United States.
Gianfranco DorettoLane Department of Computer Science and Electrical Engineering, Benjamin M. Statler College of Engineering and Mineral Resources, West Virginia University, Morgantown, West Virginia, United States.
William NealDepartment of Pediatrics, School of Medicine, West Virginia University, Morgantown, West Virginia, United States.
Lee A PylesDepartment of Pediatrics, School of Medicine, West Virginia University, Morgantown, West Virginia, United States.
West Virginia University · USWest Virginia University Hospitals · US

Funding

West Virginia IDEA-CTRU54GM104942 · NIGMS · WEST VIRGINIA UNIVERSITY · PI Laura F. Gibson · 2012 to 2026
$81.0M
NIGMS NIH HHS U54 GM104942
6 · The paper itself

Abstract

backgroundThe United States, and especially West Virginia, have a tremendous burden of coronary artery disease (CAD). Undiagnosed familial hypercholesterolemia (FH) is an important factor for CAD in the U.S. Identification of a CAD phenotype is an initial step to find families with FH.

objectiveWe hypothesized that a CAD phenotype detection algorithm that uses discrete data elements from electronic health records (EHRs) can be validated from EHR information housed in a data repository.

methodsWe developed an algorithm to detect a CAD phenotype which searched through discrete data elements, such as diagnosis, problem lists, medical history, billing, and procedure (International Classification of Diseases [ICD]-9/10 and Current Procedural Terminology [CPT]) codes. The algorithm was applied to two cohorts of 500 patients, each with varying characteristics. The second (younger) cohort consisted of parents from a school child screening program. We then determined which patients had CAD by systematic, blinded review of EHRs. Following this, we revised the algorithm by refining the acceptable diagnoses and procedures. We ran the second algorithm on the same cohorts and determined the accuracy of the modification.

resultsCAD phenotype Algorithm I was 89.6% accurate, 94.6% sensitive, and 85.6% specific for group 1. After revising the algorithm (denoted CAD Algorithm II) and applying it to the same groups 1 and 2, sensitivity 98.2%, specificity 87.8%, and accuracy 92.4; accuracy 93% for group 2. Group 1 F1 score was 92.4%. Specific ICD-10 and CPT codes such as "coronary angiography through a vein graft" were more useful than generic terms.

conclusionWe have created an algorithm, CAD Algorithm II, that detects CAD on a large scale with high accuracy and sensitivity (recall). It has proven useful among varied patient populations. Use of this algorithm can extend to monitor a registry of patients in an EHR and/or to identify a group such as those with likely FH.

Indexed as

Coronary Artery DiseaseElectronic Health RecordsHospitalsHumansInternational Classification of Diseases

Identifiers

PMID33406541
PMCPMC7787710
OpenAlexW3119982908

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.