Evidence map›Paper›PMID 33406112›Full record

ArticlePloS one2021

Development of a reverse transcription recombinase polymerase amplification assay for rapid and direct visual detection of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2).

Yee Ling Lau, Ilyiana Binti Ismail, Nur Izati Binti Mustapa, Meng Yee Lai, Tuan Suhaila Tuan Soh, Afifah Haji Hassan, Kalaiarasu M Peariasamy, Yee Leng Lee, Maria Kahar Bador Abdul Kahar, Jennifer Chong and 1 more

Erratum issuedAbstract read
In one paragraph

Article in PloS one, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed.

  1. Review
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  12. COVID-19 diagnostics: Molecular biology to nanomaterials.Clinica chimica acta; international journal of clinical chemistry · 2023
    Review
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  20. Types and Applications of Nicking Enzyme-Combined Isothermal Amplification.International journal of molecular sciences · 2022
    Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors.

Yee Ling LauDepartment of Parasitology, Faculty of Medicine, University of Malaya, Kuala Lumpur, Malaysia.ORCID 0000-0002-2037-2165
Ilyiana Binti IsmailDepartment of Pathology, Hospital Sungai Buloh, Selangor, Malaysia.
Nur Izati Binti MustapaDepartment of Pathology, Hospital Sungai Buloh, Selangor, Malaysia.
Meng Yee LaiDepartment of Parasitology, Faculty of Medicine, University of Malaya, Kuala Lumpur, Malaysia.
Tuan Suhaila Tuan SohDepartment of Pathology, Hospital Sungai Buloh, Selangor, Malaysia.
Afifah Haji HassanDepartment of Pathology, Hospital Sungai Buloh, Selangor, Malaysia.
Kalaiarasu M PeariasamyClinical Research Centre, Hospital Sungai Buloh, Selangor, Malaysia.
Yee Leng LeeClinical Research Centre, Hospital Sungai Buloh, Selangor, Malaysia.
Maria Kahar Bador Abdul KaharDepartment of Medical Microbiology, Faculty of Medicine, University of Malaya, Kuala Lumpur, Malaysia.
Jennifer ChongDepartment of Medical Microbiology, Faculty of Medicine, University of Malaya, Kuala Lumpur, Malaysia.
Pik Pin GohInstitute for Clinical Research (ICR), National Institutes of Health (NIH), Ministry of Health Malaysia, Putrajaya, Malaysia.

Funding

The impact of quality end-of-life care in nursing homesR01NR009547 · NINR · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI FORBES-THOMPSON, SARAH ANN · 2006 to 2010
$1.6M
NINR NIH HHS R01 NR009547
6 · The paper itself

Abstract

Rapid diagnosis is an important intervention in managing the Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) outbreak. Real time reverse transcription polymerase chain reaction (RT-qPCR) remains the primary means for diagnosing the new virus strain but it is time consuming and costly. Recombinase polymerase amplification (RPA) is an isothermal amplification assay that does not require a PCR machine. It is an affordable, rapid, and simple assay. In this study, we developed and optimized a sensitive reverse transcription (RT)-RPA assay for the rapid detection of SARS-CoV-2 using SYBR Green I and/or lateral flow (LF) strip. The analytical sensitivity and specificity of the RT-RPA assay were tested by using 10-fold serial diluted synthetic RNA and genomic RNA of similar viruses, respectively. Clinical sensitivity and specificity of the RT-RPA assay were carried out using 78 positive and 35 negative nasopharyngeal samples. The detection limit of both RPA and RT-qPCR assays was 7.659 and 5 copies/μL RNA, respectively with no cross reactivity with other viruses. The clinical sensitivity and specificity of RT-RPA were 98% and 100%, respectively. Our study showed that RT-RPA represents a viable alternative to RT-qPCR for the detection of SARS-CoV-2, especially in areas with limited infrastructure.

Indexed as

COVID-19HumansMalaysiaNucleic Acid Amplification TechniquesReal-Time Polymerase Chain ReactionRecombinasesReverse TranscriptionSARS-CoV-2Sensitivity and SpecificityRecombinases

Identifiers

PMID33406112
PMCPMC7787525

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.