Evidence map›Paper›PMID 33403624›Full record

ReviewIn vitro cellular & developmental biology. Animal2021

Organoid culture to study epithelial cell differentiation and barrier formation in the colon: bridging the gap between monolayer cell culture and human subject research.

James Varani, Shannon D McClintock, Muhammad Nadeem Aslam

Registry-linked trialAbstract readReview
In one paragraph

Review in In vitro cellular & developmental biology. Animal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT03869905 (Aquamin®, a Multi-mineral Natural Product From Red Marine Algae, as an Adjuvant Intervention for Mild Ulcerative Colitis and Ulcerative Colitis in Remission), which is not on this map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT03869905 phase2active not recruitingnot on this map

Aquamin®, a Multi-mineral Natural Product From Red Marine Algae, as an Adjuvant Intervention for Mild Ulcerative Colitis and Ulcerative Colitis in Remission

TypeinterventionalSponsorMuhammad N Aslam, MDRan2019 to 2027Enrolled40ConditionsUlcerative ColitisArmsAquamin®, Placebo first then Aquamin®
3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

  1. Trial
  2. Article
  3. Paraffin Embedding and Histological Staining of Intestinal Organoids.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  4. Review
  5. A Three-Step Protocol to Differentiate iPSC into Colon Organoids.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  6. Article
  7. Review
  8. Article
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

James VaraniThe Department of Pathology, The University of Michigan Medical School, Ann Arbor, MI, 48109, USA. varani@umich.edu.
Shannon D McClintockThe Department of Pathology, The University of Michigan Medical School, Ann Arbor, MI, 48109, USA.
Muhammad Nadeem AslamThe Department of Pathology, The University of Michigan Medical School, Ann Arbor, MI, 48109, USA.

Funding

Isolation and in vitro maintenance of intact colonic crypts from normal human colR21CA181855 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI VARANI, JAMES · 2014 to 2016
$607k
Trace element supplementation to enhance calcium-mediated suppression of human colon adenoma growthR21CA201782 · NCI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI VARANI, JAMES · 2016 to 2017
$526k
National Cancer Institute CA181855National Cancer Institute CA201782NCI NIH HHS CA181855NCI NIH HHS CA201782NCI NIH HHS R21 CA181855NCI NIH HHS R21 CA201782Office of Dietary Supplements Administrative Supplement
6 · The paper itself

Abstract

Organoid culture provides a powerful technology that can bridge the gap between monolayer cell culture on the one hand and whole animal or human subject research on the other. Tissues from many different organs from multiple species, including human, have already been successfully adapted to organoid growth. While optimal culture conditions have not yet been established for all tissue types, it seems that most tissues will, ultimately, be amenable to this type of culture. The colon is one of the tissues in which organoid culture was first established as a technology and which has been most successfully employed. The ready availability of histologically normal tissue as well as both premalignant and malignant tissue (often from the same individual) makes this possible. While individual tumors are highly variable relative to one another in organoid culture, a high degree of genotypic consistency exists between the tumor tissue and the histologically normal counterpart from a given source. Further, source material and tumor tissue in organoid culture demonstrate a high degree of genotypic consistency. Even after 6-9 mo in continuous culture, drift in the mutational profile has been shown to be minimal. Colon tissue maintained in organoid culture, thus, provides a good surrogate for the tissue of origin-a surrogate, however, that is as amenable to intervention with molecular, pharmacological, and immunological approaches as are more-traditionally studied cell lines.

Indexed as

Cell Culture TechniquesCell DifferentiationResearch SubjectsAnimalsColonEpithelial CellsHumansOrgan Culture TechniquesOrganoidsAdenomaColonic mucosaOrganoidProteomics

Identifiers

PMID33403624
PMCPMC8720467

What OpenQuestion holds

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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.