Evidence map›Paper›PMID 33403440›Full record

ArticlePlanta2021

Comparative transcriptomic analysis between 'Summer Black' and its bud sport 'Nantaihutezao' during developmental stages.

Feng Leng, Yunling Ye, Xiaoheng Zhu, Yue Zhang, Ziyue Zhang, Jiayu Shi, Nan Shen, Huijuan Jia, Li Wang

Abstract read
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In one paragraph

Article in Planta, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Feng LengCollege of Horticulture and Plant Protection, Yangzhou University, Yangzhou, 225009, China.
Yunling YeCollege of Horticulture and Plant Protection, Yangzhou University, Yangzhou, 225009, China.
Xiaoheng ZhuKey Laboratory of Horticultural Plant Growth, Development and Quality Improvement of the Ministry of Agriculture/Department of Horticulture, Zhejiang University, Hangzhou, 310058, China.
Yue ZhangCollege of Horticulture and Plant Protection, Yangzhou University, Yangzhou, 225009, China.
Ziyue ZhangCollege of Horticulture and Plant Protection, Yangzhou University, Yangzhou, 225009, China.
Jiayu ShiCollege of Horticulture and Plant Protection, Yangzhou University, Yangzhou, 225009, China.
Nan ShenCollege of Horticulture and Plant Protection, Yangzhou University, Yangzhou, 225009, China.
Huijuan JiaKey Laboratory of Horticultural Plant Growth, Development and Quality Improvement of the Ministry of Agriculture/Department of Horticulture, Zhejiang University, Hangzhou, 310058, China. jiahuijuan@zju.edu.cn.
Li WangCollege of Horticulture and Plant Protection, Yangzhou University, Yangzhou, 225009, China. liwang@yzu.edu.cn.ORCID http://orcid.org/0000-0003-1688-064X
Yangzhou University · CNMinistry of Agriculture · IDZhejiang University · CN

Funding

Natural Science Foundation of Jiangsu Province BK20190899
6 · The paper itself

Abstract

MAIN

conclusion4-coumarate-CoA ligase (VIT_02s0109g00250) and copper amine oxidase (VIT_17s0000g09100) played essential roles in contributing to the total soluble solid and total anthocyanin variations induced by bud sport in grape berries. Taste and color, which are important organoleptic qualities of grape berry, undergo rapid and substantial changes during development and ripening. In this study, we used two cultivars 'Summer Black' and its bud sport 'Nantaihutezao' to explore and identify differentially expressed genes associated with total soluble solid and anthocyanin during developmental stages using RNA-Seq. Overall, substantial differences in expression were observed across berry development between the two cultivars. 5388 genes were detected by weighted gene co-expression network analysis (WGCNA) associated with the total soluble solid (TSS) and anthocyanin contents variations. Several of these genes were significantly enriched in the phenylalanine metabolism pathway; two hub genes 4-coumarate-CoA ligase (VIT_02s0109g00250) and copper amine oxidase (VIT_17s0000g09100) played the most essential roles in relating to the total soluble solid and total anthocyanin variations induced by bud sport through Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment and co-expression network analysis. These findings provide insights into the molecular mechanism responsible for the bud sport phenotype.

Indexed as

FruitGene Expression Regulation, PlantGenes, PlantTranscriptomeVitisGene Expression ProfilingBud sportGrapeNantaihutezaoSummer BlackTranscriptomeWGCNA

Identifiers

PMID33403440
OpenAlexW3119844903

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.