Evidence map›Paper›PMID 33400858›Full record

ArticleAnnals of clinical and translational neurology2021

A new clustering method identifies multiple sclerosis-specific T-cell receptors.

Fumie Hayashi, Noriko Isobe, Jacob Glanville, Takuya Matsushita, Guzailiayi Maimaitijiang, Shoko Fukumoto, Mitsuru Watanabe, Katsuhisa Masaki, Jun-Ichi Kira

Open access · goldAbstract read
In one paragraph

Article in Annals of clinical and translational neurology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.0field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
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  6. Review
  7. Targeted depletion of TRBV9Nature medicine · 2023
    Article
  8. Review
  9. Risk HLA Variants Affect the T-Cell Repertoire in Multiple Sclerosis.Neurology(R) neuroimmunology & neuroinflammation · 2023
    Article
  10. Neoantigens: promising targets for cancer therapy.Signal transduction and targeted therapy · 2023
    Review
  11. Copy number variations across the blood-brain barrier in multiple sclerosis.Annals of clinical and translational neurology · 2022
    Article
  12. Review
  13. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Fumie HayashiDepartment of Neurology, Graduate School of Medical Sciences, Kyushu University, Fukuoka, Japan.ORCID 0000-0002-7754-3770
Noriko IsobeDepartment of Neurology, Graduate School of Medical Sciences, Kyushu University, Fukuoka, Japan.ORCID 0000-0001-9525-4254
Jacob GlanvilleComputational and Systems Immunology Program, Stanford University School of Medicine, Stanford, California, USA.
Takuya MatsushitaDepartment of Neurology, Graduate School of Medical Sciences, Kyushu University, Fukuoka, Japan.ORCID 0000-0002-4629-1312
Guzailiayi MaimaitijiangDepartment of Neurology, Graduate School of Medical Sciences, Kyushu University, Fukuoka, Japan.
Shoko FukumotoDepartment of Neurology, Graduate School of Medical Sciences, Kyushu University, Fukuoka, Japan.
Mitsuru WatanabeDepartment of Neurology, Graduate School of Medical Sciences, Kyushu University, Fukuoka, Japan.ORCID 0000-0003-0831-623X
Katsuhisa MasakiDepartment of Neurology, Graduate School of Medical Sciences, Kyushu University, Fukuoka, Japan.ORCID 0000-0003-2516-1102
Jun-Ichi KiraDepartment of Neurology, Graduate School of Medical Sciences, Kyushu University, Fukuoka, Japan.ORCID 0000-0001-5307-2671
Kyushu University · JPStanford University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

objectiveTo characterize T-cell receptors (TCRs) and identify target epitopes in multiple sclerosis (MS).

methodsPeripheral blood mononuclear cells were obtained from 39 MS patients and 19 healthy controls (HCs). TCR repertoires for α/β/δ/γ chains, TCR diversity, and V/J usage were determined by next-generation sequencing. TCR β chain repertoires were compared with affectation status using a novel clustering method, Grouping of Lymphocyte Interactions by Paratope Hotspots (GLIPH). Cytomegalovirus (CMV)-IgG was measured in an additional 113 MS patients and 93 HCs. Regulatory T cells (Tregs) were measured by flow cytometry.

resultsTCR diversity for all four chains decreased with age. TCRα and TCRβ diversity was higher in MS patients (P = 0.0015 and 0.024, respectively), even after age correction. TRAJ56 and TRBV4-3 were more prevalent in MS patients than in HCs (p

interpretationHigh TCRα/TCRβ diversity, regardless of age, is characteristic of MS. Association of a CMV-recognizing TCR with mild disability indicates CMV's protective role in HLA-DRB1*04:05-positive MS.

Indexed as

AdultCluster AnalysisCytomegalovirus InfectionsFemaleHumansMaleMiddle AgedMultiple SclerosisReceptors, Antigen, T-CellReceptors, Antigen, T-Cell

Identifiers

PMID33400858
PMCPMC7818280
OpenAlexW3120962665

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.