Evidence map›Paper›PMID 33400854›Full record

ArticleChembiochem : a European journal of chemical biology2021

Discovery of an Allosteric Ligand Binding Site in SMYD3 Lysine Methyltransferase.

Vladimir O Talibov, Edoardo Fabini, Edward A FitzGerald, Daniele Tedesco, Daniela Cederfeldt, Martin J Talu, Moira M Rachman, Filip Mihalic, Elisabetta Manoni, Marina Naldi and 9 more

Abstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Promiscuous Enzymes for Residue-Specific Peptide and Protein Late-Stage Functionalization.Chembiochem : a European journal of chemical biology · 2023
    Review
  5. Review
  6. Article
  7. Review
  8. Article
  9. Review
  10. Discovery of an Allosteric Ligand Binding Site in SMYD3 Lysine Methyltransferase.Chembiochem : a European journal of chemical biology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Vladimir O TalibovDepartment of Chemistry-BMC, Uppsala University, Husargatan 3, 754 24, Uppsala, Sweden.ORCID 0000-0002-1135-2744
Edoardo FabiniDepartment of Pharmacy and Biotechnology, Alma Mater Studiorum University of Bologna, Via Belmeloro 6, 40126, Bologna, Italy.ORCID 0000-0001-8688-2208
Edward A FitzGeraldDepartment of Chemistry-BMC, Uppsala University, Husargatan 3, 754 24, Uppsala, Sweden.ORCID 0000-0002-0603-1241
Daniele TedescoDepartment of Pharmacy and Biotechnology, Alma Mater Studiorum University of Bologna, Via Belmeloro 6, 40126, Bologna, Italy.ORCID 0000-0003-2585-7791
Daniela CederfeldtDepartment of Chemistry-BMC, Uppsala University, Husargatan 3, 754 24, Uppsala, Sweden.
Martin J TaluDepartment of Chemistry-BMC, Uppsala University, Husargatan 3, 754 24, Uppsala, Sweden.
Moira M RachmanInstitut de Biomedicina de la Universitat de Barcelona (IBUB) and Facultat de Farmacia, Universitat de Barcelona, Av. Joan XXIII 27-31, 08028, Barcelona, Spain.ORCID 0000-0003-3671-8885
Filip MihalicDepartment of Chemistry-BMC, Uppsala University, Husargatan 3, 754 24, Uppsala, Sweden.
Elisabetta ManoniInstitute for Organic Synthesis and Photoreactivity, National Research Council, Via P. Gobetti 101, 40129, Bologna, Italy.
Marina NaldiDepartment of Pharmacy and Biotechnology, Alma Mater Studiorum University of Bologna, Via Belmeloro 6, 40126, Bologna, Italy.ORCID 0000-0003-4468-2974
Paola SaneseMedical Genetics, National Institute for Gastroenterology, IRCCS 'S. de Bellis' Research Hospital, 70013, Bari, Italy.
Giovanna ForteMedical Genetics, National Institute for Gastroenterology, IRCCS 'S. de Bellis' Research Hospital, 70013, Bari, Italy.
Martina Lepore SignorileMedical Genetics, National Institute for Gastroenterology, IRCCS 'S. de Bellis' Research Hospital, 70013, Bari, Italy.
Xavier BarrilInstitut de Biomedicina de la Universitat de Barcelona (IBUB) and Facultat de Farmacia, Universitat de Barcelona, Av. Joan XXIII 27-31, 08028, Barcelona, Spain.
Cristiano SimoneMedical Genetics, National Institute for Gastroenterology, IRCCS 'S. de Bellis' Research Hospital, 70013, Bari, Italy.
Manuela BartoliniDepartment of Pharmacy and Biotechnology, Alma Mater Studiorum University of Bologna, Via Belmeloro 6, 40126, Bologna, Italy.ORCID 0000-0002-2890-3856
Doreen DobritzschDepartment of Chemistry-BMC, Uppsala University, Husargatan 3, 754 24, Uppsala, Sweden.
Alberto Del RioInstitute for Organic Synthesis and Photoreactivity, National Research Council, Via P. Gobetti 101, 40129, Bologna, Italy.ORCID 0000-0002-1890-6797
U Helena DanielsonDepartment of Chemistry-BMC, Uppsala University, Husargatan 3, 754 24, Uppsala, Sweden.ORCID 0000-0003-2728-0340

Funding

Fondazione Italiana per la Ricerca sul Cancro (IT IG 19172H2020 Marie Skłodowska-Curie Actions 675899Ministero della SalutePRIN-Research Projects of National relevance from the Italian MIURRegione Emilia-Romagna 2014/2020 project ONCOPENTAVetenskapsrådet D0571301
6 · The paper itself

Abstract

SMYD3 is a multifunctional epigenetic enzyme with lysine methyltransferase activity and various interaction partners. It is implicated in the pathophysiology of cancers but with an unclear mechanism. To discover tool compounds for clarifying its biochemistry and potential as a therapeutic target, a set of drug-like compounds was screened in a biosensor-based competition assay. Diperodon was identified as an allosteric ligand; its R and S enantiomers were isolated, and their affinities to SMYD3 were determined (K

Indexed as

Allosteric SiteBinding SitesCell Line, TumorDrug Evaluation, PreclinicalHistone-Lysine N-MethyltransferaseHSP90 Heat-Shock ProteinsHumansKineticsLigandsMolecular Dynamics SimulationPiperidinesProtein BindingStereoisomerismdiperodonHistone-Lysine N-MethyltransferaseHSP90 Heat-Shock ProteinsLigandsPiperidinesSMYD3 protein, humanbiophysical methodsepigenetic enzymesligand discoverySMYD3 biology

Identifiers

PMID33400854
PMCPMC8248052

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.