Evidence map›Paper›PMID 33398175›Full record

ArticleNature structural & molecular biology2021

Stepwise gating of the Sec61 protein-conducting channel by Sec63 and Sec62.

Samuel Itskanov, Katie M Kuo, James C Gumbart, Eunyong Park

Open access · greenAbstract read
In one paragraph

Article in Nature structural & molecular biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
4.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 65 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Samuel ItskanovBiophysics Graduate Program, University of California, Berkeley, CA, USA.ORCID http://orcid.org/0000-0003-0705-2359
Katie M KuoSchool of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, GA, USA.
James C GumbartSchool of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, GA, USA.
Eunyong ParkDepartment of Molecular and Cell Biology, University of California, Berkeley, CA, USA. eunyong_park@berkeley.edu.ORCID http://orcid.org/0000-0003-2994-5174
Georgia Institute of Technology · USQB3 · USUniversity of California, Berkeley · US

Funding

MOLECULAR BIOPHYSICS TRAINING GRANTT32GM008295 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI HURLEY, JAMES H, WEMMER, DAVID E · 1989 to 2022
$8.1M
Dynamic characterization of outer-membrane-protein biogenesis by the BAM and TAM complexesR01GM123169 · NIGMS · GEORGIA INSTITUTE OF TECHNOLOGY · PI GUMBART, JAMES C. · 2017 to 2021
$1.4M
NIGMS NIH HHS R01 GM123169NIGMS NIH HHS T32 GM008295
6 · The paper itself

Abstract

Many proteins are transported into the endoplasmic reticulum by the universally conserved Sec61 channel. Post-translational transport requires two additional proteins, Sec62 and Sec63, but their functions are poorly defined. In the present study, we determined cryo-electron microscopy (cryo-EM) structures of several variants of Sec61-Sec62-Sec63 complexes from Saccharomyces cerevisiae and Thermomyces lanuginosus and show that Sec62 and Sec63 induce opening of the Sec61 channel. Without Sec62, the translocation pore of Sec61 remains closed by the plug domain, rendering the channel inactive. We further show that the lateral gate of Sec61 must first be partially opened by interactions between Sec61 and Sec63 in cytosolic and luminal domains, a simultaneous disruption of which completely closes the channel. The structures and molecular dynamics simulations suggest that Sec62 may also prevent lipids from invading the channel through the open lateral gate. Our study shows how Sec63 and Sec62 work together in a hierarchical manner to activate Sec61 for post-translational protein translocation.

Indexed as

Heat-Shock ProteinsMembrane Transport ProteinsModels, MolecularSaccharomyces cerevisiae ProteinsSEC Translocation ChannelsEndoplasmic ReticulumEurotialesProtein Processing, Post-TranslationalProtein TransportSaccharomyces cerevisiaeHeat-Shock ProteinsMembrane Transport ProteinsSaccharomyces cerevisiae ProteinsSEC61 protein, S cerevisiaeSEC62 protein, S cerevisiaeSEC63 protein, S cerevisiaeSEC Translocation Channels

Identifiers

PMID33398175
PMCPMC8236211
OpenAlexW3119426777

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.