Evidence map›Paper›PMID 33398020›Full record

ArticleCommunications biology2021

Structural insights into photoactivation of plant Cryptochrome-2.

Malathy Palayam, Jagadeesan Ganapathy, Angelica M Guercio, Lior Tal, Samuel L Deck, Nitzan Shabek

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
10.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 62 citations in OpenAlex.

  1. Key residues Tyr293, Val360, and Tyr399 regulate flavin stability in the plant cryptochrome from Chlamydomonas reinhardtii.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2026
    Article
  2. Review
  3. Article
  4. Developing Optogenetic Approaches to Study CaCold Spring Harbor perspectives in biology · 2026
    Review
  5. Article
  6. Article
  7. The Quantum Environment in Cryptochrome Enhances Light Absorption of FAD.bioRxiv : the preprint server for biology · 2026
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Microbial drivers of root plasticity.The New phytologist · 2025
    Review
  14. Elucidation of a distinct photoreduction pathway in class IIProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  15. Article
  16. Kinetics of Riboflavin Production byInternational journal of molecular sciences · 2024
    Article
  17. Review
  18. Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Malathy PalayamDepartment of Plant Biology, University of California - Davis, One shields Avenue, 1002 Life sciences, Davis, CA, 95616, USA.
Jagadeesan GanapathyDepartment of Plant Biology, University of California - Davis, One shields Avenue, 1002 Life sciences, Davis, CA, 95616, USA.
Angelica M GuercioDepartment of Plant Biology, University of California - Davis, One shields Avenue, 1002 Life sciences, Davis, CA, 95616, USA.
Lior TalDepartment of Plant Biology, University of California - Davis, One shields Avenue, 1002 Life sciences, Davis, CA, 95616, USA.ORCID 0000-0002-1119-3392
Samuel L DeckDepartment of Plant Biology, University of California - Davis, One shields Avenue, 1002 Life sciences, Davis, CA, 95616, USA.
Nitzan ShabekDepartment of Plant Biology, University of California - Davis, One shields Avenue, 1002 Life sciences, Davis, CA, 95616, USA. nshabek@ucdavis.edu.ORCID 0000-0002-2190-5955
University of California, Davis · US

Funding

User Training and OutreachP30GM124169 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI PAUL David ADAMS, Gregory L Hura · 2017 to 2026
$28.6M
NIGMS NIH HHS P30 GM124169
6 · The paper itself

Abstract

Cryptochromes (CRYs) are evolutionarily conserved photoreceptors that mediate various light-induced responses in bacteria, plants, and animals. Plant cryptochromes govern a variety of critical growth and developmental processes including seed germination, flowering time and entrainment of the circadian clock. CRY's photocycle involves reduction of their flavin adenine dinucleotide (FAD)-bound chromophore, which is completely oxidized in the dark and semi to fully reduced in the light signaling-active state. Despite the progress in characterizing cryptochromes, important aspects of their photochemistry, regulation, and light-induced structural changes remain to be addressed. In this study, we determine the crystal structure of the photosensory domain of Arabidopsis CRY2 in a tetrameric active state. Systematic structure-based analyses of photo-activated and inactive plant CRYs elucidate distinct structural elements and critical residues that dynamically partake in photo-induced oligomerization. Our study offers an updated model of CRYs photoactivation mechanism as well as the mode of its regulation by interacting proteins.

Indexed as

Amino Acid SequenceArabidopsisArabidopsis ProteinsCryptochromesFlavin-Adenine DinucleotideProtein Structure, QuaternaryArabidopsis ProteinsCRY2 protein, ArabidopsisCryptochromesFlavin-Adenine Dinucleotide

Identifiers

PMID33398020
PMCPMC7782693
OpenAlexW3119783568

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.