Evidence map›Paper›PMID 33398001›Full record

ArticleNature communications2021

Insights into SusCD-mediated glycan import by a prominent gut symbiont.

Declan A Gray, Joshua B R White, Abraham O Oluwole, Parthasarathi Rath, Amy J Glenwright, Adam Mazur, Michael Zahn, Arnaud Baslé, Carl Morland, Sasha L Evans and 6 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
14.2field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 80 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Discovery of a secretedGut microbes · 2026
    Article
  5. Article
  6. Article
  7. Structural basis of iron piracy by human gutProceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  8. Article
  9. Co-opting the bacterial lipoprotein pathway for the biosynthesis of lipidated macrocyclic peptides.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  10. Article
  11. Lessons from the model gut BacteroidalesJournal of bacteriology · 2025
    Review
  12. Niche partitioning by resource size in the gut microbiome.bioRxiv : the preprint server for biology · 2025
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Exploring the Genetic and Functional Diversity ofInternational journal of molecular sciences · 2025
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 5 institutions in 2 countries.

Declan A GrayBiosciences Institute, The Medical School, Newcastle University, Newcastle upon Tyne, NE2 4HH, UK.
Joshua B R WhiteAstbury Centre for Structural Molecular Biology, Faculty of Biological Sciences, University of Leeds, Leeds, LS2 9JT, UK.
Abraham O OluwolePhysical and Theoretical Chemistry Laboratory, University of Oxford, Oxford, OX1 3QZ, UK.ORCID http://orcid.org/0000-0001-8647-4781
Parthasarathi RathBiozentrum, University of Basel, Basel, Switzerland.
Amy J GlenwrightBiosciences Institute, The Medical School, Newcastle University, Newcastle upon Tyne, NE2 4HH, UK.ORCID http://orcid.org/0000-0002-2871-3278
Adam MazurBiozentrum, University of Basel, Basel, Switzerland.
Michael ZahnBiozentrum, University of Basel, Basel, Switzerland.
Arnaud BasléBiosciences Institute, The Medical School, Newcastle University, Newcastle upon Tyne, NE2 4HH, UK.
Carl MorlandBiosciences Institute, The Medical School, Newcastle University, Newcastle upon Tyne, NE2 4HH, UK.
Sasha L EvansAstbury Centre for Structural Molecular Biology, Faculty of Biological Sciences, University of Leeds, Leeds, LS2 9JT, UK.
Alan CartmellInstitute of Systems, Molecular and Integrative Biology, University of Liverpool, Liverpool, L69 7ZB, UK.ORCID http://orcid.org/0000-0002-5512-249X
Carol V RobinsonPhysical and Theoretical Chemistry Laboratory, University of Oxford, Oxford, OX1 3QZ, UK.ORCID http://orcid.org/0000-0001-7829-5505
Sebastian HillerBiozentrum, University of Basel, Basel, Switzerland.ORCID http://orcid.org/0000-0002-6709-4684
Neil A RansonAstbury Centre for Structural Molecular Biology, Faculty of Biological Sciences, University of Leeds, Leeds, LS2 9JT, UK.ORCID http://orcid.org/0000-0002-3640-5275
David N BolamBiosciences Institute, The Medical School, Newcastle University, Newcastle upon Tyne, NE2 4HH, UK. david.bolam@ncl.ac.uk.ORCID http://orcid.org/0000-0003-0314-3122
Bert van den BergBiosciences Institute, The Medical School, Newcastle University, Newcastle upon Tyne, NE2 4HH, UK. bert.van-den-berg@ncl.ac.uk.ORCID http://orcid.org/0000-0003-1966-8804
Newcastle University · GBUniversity of Basel · CHUniversity of Leeds · GBUniversity of Oxford · GBUniversity of Liverpool · GB

Funding

Biotechnology and Biological Sciences Research Council BB/P003192/1Medical Research Council MR/N020413/1Wellcome Trust 108466Wellcome Trust 108466/Z/15/ZWellcome Trust 215064/Z/18/Z
6 · The paper itself

Abstract

In Bacteroidetes, one of the dominant phyla of the mammalian gut, active uptake of large nutrients across the outer membrane is mediated by SusCD protein complexes via a "pedal bin" transport mechanism. However, many features of SusCD function in glycan uptake remain unclear, including ligand binding, the role of the SusD lid and the size limit for substrate transport. Here we characterise the β2,6 fructo-oligosaccharide (FOS) importing SusCD from Bacteroides thetaiotaomicron (Bt1762-Bt1763) to shed light on SusCD function. Co-crystal structures reveal residues involved in glycan recognition and suggest that the large binding cavity can accommodate several substrate molecules, each up to ~2.5 kDa in size, a finding supported by native mass spectrometry and isothermal titration calorimetry. Mutational studies in vivo provide functional insights into the key structural features of the SusCD apparatus and cryo-EM of the intact dimeric SusCD complex reveals several distinct states of the transporter, directly visualising the dynamics of the pedal bin transport mechanism.

Indexed as

Gastrointestinal MicrobiomeSymbiosisBacterial ProteinsCryoelectron MicroscopyLigandsMagnetic Resonance SpectroscopyModels, MolecularOligosaccharidesPolysaccharidesProtein ConformationStructure-Activity RelationshipBacterial ProteinsfructooligosaccharideLigandsOligosaccharidesPolysaccharides

Identifiers

PMID33398001
PMCPMC7782687
OpenAlexW3120964251

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.