Evidence map›Paper›PMID 33395311›Full record

ArticleNano letters2021

DNA Nanoswitch Barcodes for Multiplexed Biomarker Profiling.

Arun Richard Chandrasekaran, Molly MacIsaac, Javier Vilcapoma, Clinton H Hansen, Darren Yang, Wesley P Wong, Ken Halvorsen

Abstract read
In one paragraph

Article in Nano letters, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. Article
  2. Article
  3. Aptamer-based DNA nanoswitches for multiplexed protein detection.Chemical communications (Cambridge, England) · 2026
    Article
  4. Article
  5. Ligation-assisted target recycling for DNA nanoswitch biosensors.bioRxiv : the preprint server for biology · 2026
    Article
  6. Aptamer-based DNA nanoswitches for multiplexed protein detection.bioRxiv : the preprint server for biology · 2026
    Article
  7. Article
  8. Isothermal assembly of DNA nanostructures.Chemical communications (Cambridge, England) · 2025
    Review
  9. Article
  10. Article
  11. Modular DNA origami-based electrochemical detection of DNA and proteins.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  12. Article
  13. Nano-Bio Interactions between DNA Nanocages and Human Serum Albumin.Journal of chemical theory and computation · 2023
    Article
  14. Article
  15. Article
  16. Self-Assembly of DNA Nanostructures in Different Cations.Small (Weinheim an der Bergstrasse, Germany) · 2023
    Article
  17. Article
  18. Self-assembly of DNA nanostructures in different cations.bioRxiv : the preprint server for biology · 2023
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Arun Richard ChandrasekaranThe RNA Institute, University at Albany, State University of New York, New York, New York 12222, United States.ORCID 0000-0001-6757-5464
Molly MacIsaacProgram in Cellular and Molecular Medicine, Boston Children's Hospital, Boston, Massachusetts 02115, United States.
Javier VilcapomaThe RNA Institute, University at Albany, State University of New York, New York, New York 12222, United States.
Clinton H HansenProgram in Cellular and Molecular Medicine, Boston Children's Hospital, Boston, Massachusetts 02115, United States.
Darren YangProgram in Cellular and Molecular Medicine, Boston Children's Hospital, Boston, Massachusetts 02115, United States.
Wesley P WongProgram in Cellular and Molecular Medicine, Boston Children's Hospital, Boston, Massachusetts 02115, United States.ORCID 0000-0001-7398-546X
Ken HalvorsenThe RNA Institute, University at Albany, State University of New York, New York, New York 12222, United States.ORCID 0000-0002-2578-1339

Funding

Manipulating nucleic acids: applications in RNA biosensing, single-molecule analysis, and DNA nanotechnologyR35GM124720 · NIGMS · STATE UNIVERSITY OF NEW YORK AT ALBANY · PI Ken A Halvorsen · 2017 to 2026
$4.6M
Single-molecule mechanical detection of protein and microRNA cancer biomarkersR21CA212827 · NCI · BOSTON CHILDREN'S HOSPITAL · PI WONG, WESLEY PHILIP · 2017 to 2019
$676k
NCI NIH HHS R21 CA212827NIGMS NIH HHS R35 GM124720
6 · The paper itself

Abstract

Molecular biomarkers play a key role in the clinic, aiding in diagnostics and prognostics, and in the research laboratory, contributing to our basic understanding of diseases. Detecting multiple and diverse molecular biomarkers within a single accessible assay would have great utility, providing a more comprehensive picture for clinical evaluation and research, but is a challenge with standard methods. Here, we report programmable DNA nanoswitches for multiplexed detection of up to 6 biomarkers at once with each combination of biomarkers producing a unique barcode signature among 64 possibilities. As a defining feature of our method, we show "mixed multiplexing" for simultaneous barcoded detection of different types of biomolecules, for example, DNA, RNA, antibody, and protein in a single assay. To demonstrate clinical potential, we show multiplexed detection of a prostate cancer biomarker panel in serum that includes two microRNA sequences and prostate specific antigen.

Indexed as

DNAMicroRNAsBiomarkers, TumorBiomarkers, TumorDNAMicroRNAsbiosensingdiagnosticsDNA barcodesDNA nanoswitchesgenotypingmultiplexed detection

Identifiers

PMID33395311
PMCPMC8059342

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.