Evidence map›Paper›PMID 33394238›Full record

ArticleJournal of computer-aided molecular design2021

Overview of the SAMPL6 pK

Mehtap Işık, Ariën S Rustenburg, Andrea Rizzi, M R Gunner, David L Mobley, John D Chodera

Abstract read
In one paragraph

Article in Journal of computer-aided molecular design, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed.

  1. Unifying pJournal of chemical information and modeling · 2026
    Article
  2. Review
  3. Benchmarking pJournal of chemical information and modeling · 2026
    Article
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Predicting pRSC advances · 2025
    Article
  10. Article
  11. Interpretable Deep-Learning pJournal of chemical information and modeling · 2025
    Article
  12. Article
  13. QupKake: Integrating Machine Learning and Quantum Chemistry for Micro-pJournal of chemical theory and computation · 2024
    Article
  14. Article
  15. Article
  16. Article
  17. MF-SuP-pActa pharmaceutica Sinica. B · 2023
    Article
  18. pJournal of chemical information and modeling · 2023
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Mehtap IşıkComputational and Systems Biology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA. mehtap.isik.000@gmail.com.ORCID 0000-0002-6789-952X
Ariën S RustenburgComputational and Systems Biology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.ORCID 0000-0002-3422-0613
Andrea RizziComputational and Systems Biology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.ORCID 0000-0001-7693-2013
M R GunnerDepartment of Physics, City College of New York, New York, NY, 10031, USA.ORCID 0000-0003-1120-5776
David L MobleyDepartment of Pharmaceutical Sciences and Department of Chemistry, University of California, Irvine, Irvine, CA, 92697, USA.ORCID 0000-0002-1083-5533
John D ChoderaComputational and Systems Biology Program, Sloan Kettering Institute, Memorial Sloan Kettering Cancer Center, New York, NY, 10065, USA.ORCID 0000-0003-0542-119X

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Hongbiao Carl Lekaye · 1985 to 2026
$347.4M
Computational alchemy for molecular design and optimizationR01GM108889 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI MOBLEY, DAVID LOWELL · 2014 to 2022
$2.5M
The role of reorganization energy in achieving selective kinase inhibition"R01GM121505 · NIGMS · SLOAN-KETTERING INST CAN RESEARCH · PI CHODERA, JOHN DAMON · 2017 to 2021
$1.8M
Advancing predictive physical modeling through focused development of model systems to drive new modeling innovationsR01GM124270 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI MOBLEY, DAVID LOWELL · 2018 to 2021
$1.5M
NCI NIH HHS P30 CA008748NIGMS NIH HHS R01 GM108889NIGMS NIH HHS R01 GM121505NIGMS NIH HHS R01 GM124270
6 · The paper itself

Abstract

The prediction of acid dissociation constants (pK

Indexed as

LigandsAlgorithmsComputer SimulationModels, ChemicalMolecular StructureProteinsSoftwareSolubilitySolventsThermodynamicsLigandsProteinsSolventsAcid dissociation constantBlind prediction challengeMacroscopic pK aMacroscopic protonation stateMicroscopic pK aMicroscopic protonation statepK aSAMPLSmall molecule

Identifiers

PMID33394238
PMCPMC7904668

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.