Evidence map›Paper›PMID 33393514›Full record

ArticleJournal of visualized experiments : JoVE2020

Automated Sample Multiplexing by using Combined Precursor Isotopic Labeling and Isobaric Tagging (cPILOT).

Albert B Arul, Renã A S Robinson

Abstract readVideo-Audio Media
In one paragraph

Article in Journal of visualized experiments : JoVE, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Albert B ArulDepartment of Chemistry, Vanderbilt University.
Renã A S RobinsonDepartment of Chemistry, Vanderbilt University; Vanderbilt Memory & Alzheimer's Center, Vanderbilt University Medical Center; Vanderbilt Brain Institute, Vanderbilt University Medical Center; Vanderbilt Institute of Chemical Biology, Vanderbilt University Medical Center; rena.as.robinson@vanderbilt.edu.

Funding

Novel Multiplexing Proteomics to Study the Periphery in Alzheimer's DiseaseR01GM117191 · NIGMS · VANDERBILT UNIVERSITY · PI ROBINSON, RENA A. S. · 2016 to 2020
$2.1M
NIGMS NIH HHS R01 GM117191
6 · The paper itself

Abstract

We have introduced a high throughput quantitative proteomics workflow, combined precursor isotopic labeling and isobaric tagging (cPILOT) capable of multiplexing up to 22 or 24 samples with tandem mass tags or isobaric N,N-dimethyl leucine isobaric tags, respectively, in a single experiment. This enhanced sample multiplexing considerably reduces mass spectrometry acquisition times and increases the utility of the expensive commercial isobaric reagents. However, the manual process of sample handling and pipetting steps in the strategy can be labor intensive, time consuming, and introduce sample loss and quantitative error. These limitations can be overcome through the incorporation of automation. Here we transferred the manual cPILOT protocol to an automated liquid handling device that can prepare large sample numbers (i.e., 96 samples) in parallel. Overall, automation increases feasibility and reproducibility of cPILOT and allows for broad usage by other researchers with comparable automation devices.

Indexed as

AlkylationAmino Acid SequenceAnimalsAutomationChromatography, LiquidData AnalysisIsotope LabelingLiverMaleMethylationMice, Inbred C57BLPeptidesProteomeProteomicsReproducibility of ResultsTandem Mass SpectrometryPeptidesProteome

Identifiers

PMID33393514
PMCPMC9153850

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.