Evidence map›Paper›PMID 33391232›Full record

ArticleFrontiers in microbiology2020

Creation of an Online Platform for Identification of Microorganisms: Peak Picking or Full-Spectrum Analysis.

Konstantin V Starostin, Evgeny A Demidov, Nikita I Ershov, Alla V Bryanskaya, Vadim M Efimov, Valeriya N Shlyakhtun, Sergey E Peltek

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Performance of MALDI-TOF Mass Spectrometry in the Philippines.Tropical medicine and infectious disease · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Konstantin V StarostinLaboratory of Molecular Biotechnologies of Federal Research Center Institute of Cytology and Genetics of The Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia.
Evgeny A DemidovLaboratory of Molecular Biotechnologies of Federal Research Center Institute of Cytology and Genetics of The Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia.
Nikita I ErshovLaboratory of Molecular Biotechnologies of Federal Research Center Institute of Cytology and Genetics of The Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia.
Alla V BryanskayaLaboratory of Molecular Biotechnologies of Federal Research Center Institute of Cytology and Genetics of The Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia.
Vadim M EfimovLaboratory of Molecular Biotechnologies of Federal Research Center Institute of Cytology and Genetics of The Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia.
Valeriya N ShlyakhtunLaboratory of Molecular Biotechnologies of Federal Research Center Institute of Cytology and Genetics of The Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia.
Sergey E PeltekLaboratory of Molecular Biotechnologies of Federal Research Center Institute of Cytology and Genetics of The Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Identification of microorganisms by MALDI-TOF mass spectrometry is a very efficient method with high throughput, speed, and accuracy. However, it is significantly limited by the absence of a universal database of reference mass spectra. This problem can be solved by creating an Internet platform for open databases of protein spectra of microorganisms. Choosing the optimal mathematical apparatus is the pivotal issue for this task. In our previous study we proposed the geometric approach for processing mass spectrometry data, which represented a mass spectrum as a vector in a multidimensional Euclidean space. This algorithm was implemented in a Jacob4 stand-alone package. We demonstrated its efficiency in delimiting two closely related species of the

Indexed as

biotypingGeometric approachMALDI—TOFmicroorganisms identificationMS data processing

Identifiers

PMID33391232
PMCPMC7775396

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.