Evidence map›Paper›PMID 33388313›Full record

ArticleArchives of biochemistry and biophysics2021

Modulation of post-powerstroke dynamics in myosin II by 2'-deoxy-ADP.

Matthew Carter Childers, Michael Geeves, Valerie Daggett, Michael Regnier

Open access · greenAbstract read
In one paragraph

Article in Archives of biochemistry and biophysics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.0field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Multiscale modeling shows how 2'-deoxy-ATP rescues ventricular function in heart failure.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  5. Incomplete-penetrant hypertrophic cardiomyopathyProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  6. Atomistic Simulations of Sarcomere Proteins.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  7. Article
  8. Article
  9. Structural OFF/ON transitions of myosin in relaxed porcine myocardium predict calcium-activated force.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  10. Mathematical modeling of myosin, muscle contraction, and movement.Archives of biochemistry and biophysics · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Matthew Carter ChildersDepartment of Bioengineering, University of Washington, Seattle, WA, 98195-5013, USA.
Michael GeevesSchool of Biosciences, University of Kent, Canterbury, United Kingdom.
Valerie DaggettDepartment of Bioengineering, University of Washington, Seattle, WA, 98195-5013, USA.
Michael RegnierDepartment of Bioengineering, University of Washington, Seattle, WA, 98195-5013, USA. Electronic address: mregnier@uw.edu.
University of Washington · USUniversity of Kent · GB

Funding

From proteins to cells to tissues: A multi-scale assessment of biomechanical regulation by the myosin molecular motorRM1GM131981 · NIGMS · STANFORD UNIVERSITY · PI BERNSTEIN, DANIEL, MACK, DAVID LEE · 2019 to 2023
$10.3M
UW Center for Translational Muscle Research (Overall Application)P30AR074990 · NIAMS · UNIVERSITY OF WASHINGTON · PI Jennifer Michelle Davis, DANIEL RAFTERY · 2019 to 2026
$7.5M
Engineered Stem Cells for Cardiac RepairR01HL128368 · NHLBI · UNIVERSITY OF WASHINGTON · PI REGNIER, MICHAEL · 2018 to 2025
$6.1M
Bioengineering Cardiovascular Training GrantT32EB001650 · NIBIB · UNIVERSITY OF WASHINGTON · PI REGNIER, MICHAEL · 2004 to 2019
$3.6M
Analyzing the Cardiac Power Grid: Adaptive responses to fluctuating local demandU01HL122199 · NHLBI · UNIVERSITY OF WASHINGTON · PI BEARD, DANIEL A, DASH, RANJAN K · 2015 to 2019
$3.3M
Myocardial Infarct in Aging Animals and dATP TherapyR56AG055594 · NIA · UNIVERSITY OF WASHINGTON · PI REGNIER, MICHAEL · 2017 to 2017
$683k
NHLBI NIH HHS R01 HL128368NHLBI NIH HHS U01 HL122199NIAMS NIH HHS P30 AR074990NIA NIH HHS R56 AG055594NIBIB NIH HHS T32 EB001650NIGMS NIH HHS RM1 GM131981
6 · The paper itself

Abstract

Muscle myosins are molecular motors that hydrolyze ATP and generate force through coordinated interactions with actin filaments, known as cross-bridge cycling. During the cross-bridge cycle, functional sites in myosin 'sense' changes in interactions with actin filaments and the nucleotide binding region, resulting in allosteric transmission of information throughout the structure. We investigated whether the dynamics of the post-powerstroke state of the cross-bridge cycle are modulated in a nucleotide-dependent fashion. We compared molecular dynamics simulations of the myosin II motor domain (M) from Dictyostelium discoideum in the presence of ADP (M.ADP) versus 2'-deoxy-ADP bound myosin (M.dADP). We found that dADP was more flexible than ADP and the two nucleotides interacted with myosin in different ways. Replacement of ADP with dADP in the post-powerstroke state also altered the conformation of the actin binding region in myosin heads. Our results provide atomic level insights into allosteric communication networks in myosin that provide insight into the nucleotide-dependent dynamics of the cross-bridge cycle.

Indexed as

Adenosine DiphosphateBinding SitesDeoxyadenine NucleotidesDictyosteliumMolecular Dynamics SimulationMyosin Type IIPliabilityProtein BindingProtein ConformationProtein DomainsAdenosine DiphosphateDeoxyadenine Nucleotidesdeoxyadenosine diphosphateMyosin Type IIAllosteryMolecular dynamics simulationMyosin

Identifiers

PMID33388313
PMCPMC7870581
OpenAlexW3115194825

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.