Evidence map›Paper›PMID 33387041›Full record

ArticleJournal of cancer research and clinical oncology2021

Impact of STAT1 polymorphisms on crizotinib-induced hepatotoxicity in ALK-positive non-small cell lung cancer patients.

Shuang Xin, Wenfeng Fang, Jianwen Li, Delan Li, Changzheng Wang, Quanfei Huang, Min Huang, Wei Zhuang, Xueding Wang, Likun Chen

Open access · greenAbstract read
In one paragraph

Article in Journal of cancer research and clinical oncology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 2 countries.

Shuang Xin *Institute of Clinical Pharmacology, School of Pharmaceutical Sciences, Sun Yat-Sen University, Guangzhou, 510060, People's Republic of China.
Wenfeng Fang *Department of Medical Oncology, State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Sun Yat-Sen University Cancer Center, Guangzhou, 510060, People's Republic of China.
Jianwen Li *CapitalBio Genomics Co., Ltd., Dongguan, 523808, China.
Delan Li *Chemotherapy Department 2, Zhongshan City People's Hospital, Zhongshan, 528403, People's Republic of China.
Changzheng WangDepartment of Computer Science, City University of Hong Kong, Hong Kong, China.
Quanfei HuangCapitalBio Genomics Co., Ltd., Dongguan, 523808, China.
Min HuangInstitute of Clinical Pharmacology, School of Pharmaceutical Sciences, Sun Yat-Sen University, Guangzhou, 510060, People's Republic of China.
Wei ZhuangInstitute of Clinical Pharmacology, School of Pharmaceutical Sciences, Sun Yat-Sen University, Guangzhou, 510060, People's Republic of China.
Xueding WangInstitute of Clinical Pharmacology, School of Pharmaceutical Sciences, Sun Yat-Sen University, Guangzhou, 510060, People's Republic of China. wangxd@mail.sysu.edu.cn.
Likun ChenDepartment of Medical Oncology, State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Sun Yat-Sen University Cancer Center, Guangzhou, 510060, People's Republic of China. chenlk@sysucc.org.cn.ORCID http://orcid.org/0000-0002-7158-3878
Sun Yat-sen University · CNSinotech Genomics (China) · CNCity University of Hong Kong · HKZhongshan People's Hospital · CN

Funding

111 project B16047National Key Research and Development Program 2016YFC0905001National Nature Science Foundation of China 81473283National Nature Science Foundation of China 81572270National Nature Science Foundation of China 81730103National Nature Science Foundation of China 81973398Natural Major Projects for Science and Technology Development from Science and Technology Ministry of China 2012ZX09506001-004
6 · The paper itself

Abstract

purposeCrizotinib is the first-line small molecule tyrosine kinase inhibitor for ALK-positive non-small cell lung cancer. In this study, a retrospective pharmacogenomics investigation was conducted to explore the relationship between genes related to RTK downstream signaling pathways and crizotinib-induced hepatic toxicity in ALK-positive NSCLC patients.

methodsThe variable importance analysis of random forest algorithm was applied to identify the significant features which contribute to the crizotinib sensitivity in Cancer Cell Line Encyclopedia (CCLE) database. The KEGG and reactome pathway enrichment analysis were conducted with EnrichR. The differential expression genes were identified with R package DESeq2 in CCLE liver derived cell lines between crizotinib sensitive and resistant groups. From 2012 to 2015, 42 NSCLC patients were enrolled in this study. 90 polymorphisms were genotyped using the Sequenom Massarray system. Sequencing of HGFR (c-Met) genes was carried out on the Ion Torrent Proton.

resultsIn total, 66.7% NSCLC patients suffered from crizotinib-induced liver toxicity and 11.9% progressed to severe hepatic toxicity. The features with the top importance from classification and regression random forest model were enriched in RTK downstream signaling pathways (JAK/STAT, RAS/RAF/MAPK, PI3K/AKT pathways) and immune system-related pathways. Collagen family genes (COL1A1, COL1A2, COL6A1, COL5A1) and other extracellular matrix protein (TNC, TAGLN, TENM2, EDIL3, VCAN, CNN1, SH3BP4, TAGLN), which were closely related to MAPK-ERK signaling pathways, were significantly enriched in crizotinib resistant cell lines. In multiple logistic regression, STAT1 rs10208033 (T > C) was significantly associated with crizotinib-induced liver toxicity (OR = 6.733, 95% CI 1.406-32.24, P = 0.017). Compared with non-CC, OR is 5.5 (95% CI 1.219-24.81, P = 0.027) for STAT1 rs10208033 CC genotype to develop crizotinib-induced liver toxicity. Further cell viability test in human fetal hepatocyte line, L-02, reveals that the STAT1 inhibitor might protect hepatocyte cells from the toxicity caused by crizotinib.

conclusionPolymorphism of rs10208033 is a potential biomarker for predicting crizotinib-induced hepatotoxicity. These results suggest that STAT1 plays an important role in crizotinib-induced hepatotoxicity. Further studies are needed to confirm our finding and understand the underlying mechanisms.

Indexed as

AdultAgedAnaplastic Lymphoma KinaseCarcinoma, Non-Small-Cell LungChemical and Drug Induced Liver InjuryCrizotinibFemaleHumansLung NeoplasmsMaleMiddle AgedPolymorphism, GeneticProtein Kinase InhibitorsProto-Oncogene Proteins c-metRetrospective StudiesSignal TransductionALK protein, humanAnaplastic Lymphoma KinaseCrizotinibMET protein, humanProtein Kinase InhibitorsProto-Oncogene Proteins c-metSTAT1 protein, humanSTAT1 Transcription FactorCrizotinibNon-small cell lung cancerPharmacogenomicsSTAT1

Identifiers

PMID33387041
PMCPMC11801888
OpenAlexW3114432904

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.