Evidence map›Paper›PMID 33386962›Full record

ArticlePlant cell reports2021

ZEITLUPE enhances expression of PIF4 and YUC8 in the upper aerial parts of Arabidopsis seedlings to positively regulate hypocotyl elongation.

Aya Saitoh, Tomoyuki Takase, Hiroshi Abe, Masaaki Watahiki, Yuki Hirakawa, Tomohiro Kiyosue

Abstract read
PubMed Publisher
In one paragraph

Article in Plant cell reports, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
3.5field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 23 citations in OpenAlex.

  1. Genetic loci and functional genes conferring deep-sowing tolerance across multiple environments in soybean.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025
    Article
  2. International journal of molecular sciences · 2025
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  4. Article
  5. Review
  6. Review
  7. Comprehensive Analysis ofInternational journal of molecular sciences · 2022
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Aya SaitohGraduate Course in Life Science, Graduate School of Science, Gakushuin University, 1-5-1 Mejiro, Toshima-Ku, Tokyo, 171-8588, Japan. ayasaito0126@gmail.com.ORCID https://orcid.org/0000-0002-8320-3289
Tomoyuki TakaseGraduate Course in Life Science, Graduate School of Science, Gakushuin University, 1-5-1 Mejiro, Toshima-Ku, Tokyo, 171-8588, Japan.
Hiroshi AbeExperimental Plant Division, Department of Biological Systems, RIKEN, BioResource Center, Tsukuba-shi, Ibaraki, 305-0074, Japan.
Masaaki WatahikiFaculty of Science, Division of Biological Sciences, Hokkaido University, Kitaku Kita 10 Nishi 8, Sapporo, 060-0810, Japan.
Yuki HirakawaGraduate Course in Life Science, Graduate School of Science, Gakushuin University, 1-5-1 Mejiro, Toshima-Ku, Tokyo, 171-8588, Japan.ORCID https://orcid.org/0000-0003-1386-3932
Tomohiro KiyosueGraduate Course in Life Science, Graduate School of Science, Gakushuin University, 1-5-1 Mejiro, Toshima-Ku, Tokyo, 171-8588, Japan.ORCID https://orcid.org/0000-0001-5624-2330
Gakushuin University · JPHokkaido University · JPRIKEN BioResource Research Center · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

key messageMicroarray and genetic analyses reveal that ZTL induces the expression of genes related to auxin synthesis, thereby promoting hypocotyl elongation. ZTL is a blue-light receptor that possesses a light-oxygen-voltage-sensing (LOV) domain, an F-box motif, and a kelch repeat domain. ZTL promotes hypocotyl elongation under high temperature (28 °C) in Arabidopsis thaliana; however, the mechanism of this regulation is unknown. Here, we divided seedlings into hypocotyls and upper aerial parts, and performed microarray analyses. In hypocotyl, 1062 genes were down-regulated in ztl mutants (ztl-3 and ztl-105) compared with wild type; some of these genes encoded enzymes involved in cell wall modification, consistent with reduced hypocotyl elongation. In upper aerial parts, 1038 genes were down-regulated in the ztl mutants compared with wild type; these included genes involved in auxin synthesis and auxin response. Furthermore, the expression of the PHYTOCHROME INTERACTING FACTOR 4 (PIF4) gene, which encodes a transcription factor known to positively regulate YUCCA genes (YUCs), was also decreased in the ztl mutants. Genetic analysis revealed that overexpression of PIF4 and YUC8 could restore the suppressed hypocotyl length in the ztl mutants. Our results suggest that ZTL induces expression of YUC8 via PIF4 in upper aerial parts and promotes hypocotyl elongation.

Indexed as

ArabidopsisArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsCell WallGene Expression Regulation, PlantHypocotylIndoleacetic AcidsMixed Function OxygenasesMutationPhytochrome BPlant Components, AerialPlants, Genetically ModifiedPromoter Regions, GeneticSeedlingsArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsIndoleacetic AcidsMixed Function OxygenasesPHYB protein, ArabidopsisPhytochrome BPIF4 protein, ArabidopsisYUCCA8 protein, ArabidopsisZTL protein, ArabidopsisHypocotyl elongationIAAphyBPIFYUCZTL

Identifiers

PMID33386962
OpenAlexW3114822610

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.