Evidence map›Paper›PMID 33384418›Full record

ArticleHorticulture research2021

Molecular investigation of Tuscan sweet cherries sampled over three years: gene expression analysis coupled to metabolomics and proteomics.

Roberto Berni, Sophie Charton, Sébastien Planchon, Sylvain Legay, Marco Romi, Claudio Cantini, Giampiero Cai, Jean-Francois Hausman, Jenny Renaut, Gea Guerriero

Open access · goldAbstract read
In one paragraph

Article in Horticulture research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 4 countries.

Roberto BerniDepartment of Life Sciences, University of Siena, via P.A. Mattioli 4, I-53100, Siena, Italy.
Sophie ChartonEnvironmental Research and Innovation Department, Luxembourg Institute of Science and Technology, 41, Rue du Brill, L-4422, Belvaux, Luxembourg.ORCID http://orcid.org/0000-0002-7941-4657
Sébastien PlanchonEnvironmental Research and Innovation Department, Luxembourg Institute of Science and Technology, 41, Rue du Brill, L-4422, Belvaux, Luxembourg.ORCID http://orcid.org/0000-0002-0455-0574
Sylvain LegayEnvironmental Research and Innovation Department, Luxembourg Institute of Science and Technology, 5, rue Bommel, L-4940, Hautcharage, Luxembourg.
Marco RomiDepartment of Life Sciences, University of Siena, via P.A. Mattioli 4, I-53100, Siena, Italy.
Claudio CantiniIstituto per la BioEconomia (IBE CNR), Dipartimento di Scienze BioAgroAlimentari, via Aurelia 49, 58022, Follonica, Italy.
Giampiero CaiDepartment of Life Sciences, University of Siena, via P.A. Mattioli 4, I-53100, Siena, Italy.
Jean-Francois HausmanEnvironmental Research and Innovation Department, Luxembourg Institute of Science and Technology, 5, rue Bommel, L-4940, Hautcharage, Luxembourg.
Jenny RenautEnvironmental Research and Innovation Department, Luxembourg Institute of Science and Technology, 41, Rue du Brill, L-4422, Belvaux, Luxembourg. jenny.renaut@list.lu.
Gea GuerrieroEnvironmental Research and Innovation Department, Luxembourg Institute of Science and Technology, 5, rue Bommel, L-4940, Hautcharage, Luxembourg. gea.guerriero@list.lu.ORCID http://orcid.org/0000-0001-6586-6997
Luxembourg Institute of Science and Technology · LUUniversity of Siena · ITInstituto di Biofisica · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Sweet cherry (Prunus avium L.) is a stone fruit widely consumed and appreciated for its organoleptic properties, as well as its nutraceutical potential. We here investigated the characteristics of six non-commercial Tuscan varieties of sweet cherry maintained at the Regional Germplasm Bank of the CNR-IBE in Follonica (Italy) and sampled ca. 60 days post-anthesis over three consecutive years (2016-2017-2018). We adopted an approach merging genotyping and targeted gene expression profiling with metabolomics. To complement the data, a study of the soluble proteomes was also performed on two varieties showing the highest content of flavonoids. Metabolomics identified the presence of flavanols and proanthocyanidins in highest abundance in the varieties Morellona and Crognola, while gene expression revealed that some differences were present in genes involved in the phenylpropanoid pathway during the 3 years and among the varieties. Finally, proteomics on Morellona and Crognola showed variations in proteins involved in stress response, primary metabolism and cell wall expansion. To the best of our knowledge, this is the first multi-pronged study focused on Tuscan sweet cherry varieties providing insights into the differential abundance of genes, proteins and metabolites.

Identifiers

PMID33384418
PMCPMC7775447
OpenAlexW3117864835

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.