Evidence map›Paper›PMID 33384352›Full record

ArticleScience (New York, N.Y.)2021

QRICH1 dictates the outcome of ER stress through transcriptional control of proteostasis.

Kwontae You, Lingfei Wang, Chih-Hung Chou, Kai Liu, Toru Nakata, Alok Jaiswal, Junmei Yao, Ariel Lefkovith, Abdifatah Omar, Jacqueline G Perrigoue and 4 more

Open access · greenAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 82 papers.

0numbers the graph read from it
0cells of the map it votes in
82citing papers in PubMed
7.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

82 citing papers in PubMed, 140 citations in OpenAlex.

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22 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Kwontae YouBroad Institute of MIT and Harvard, Cambridge, MA, USA.ORCID https://orcid.org/0000-0002-9928-6779
Lingfei WangBroad Institute of MIT and Harvard, Cambridge, MA, USA.ORCID https://orcid.org/0000-0001-9175-7006
Chih-Hung ChouBroad Institute of MIT and Harvard, Cambridge, MA, USA.ORCID https://orcid.org/0000-0001-5714-1718
Kai LiuDepartment of Molecular Biology, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA.ORCID https://orcid.org/0000-0002-8014-2310
Toru NakataDepartment of Molecular Biology, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA.ORCID https://orcid.org/0000-0003-3678-4807
Alok JaiswalBroad Institute of MIT and Harvard, Cambridge, MA, USA.ORCID https://orcid.org/0000-0002-1910-4681
Junmei YaoDepartment of Molecular Biology, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA.ORCID https://orcid.org/0000-0002-4074-7761
Ariel LefkovithBroad Institute of MIT and Harvard, Cambridge, MA, USA.ORCID https://orcid.org/0000-0003-4519-0429
Abdifatah OmarDepartment of Molecular Biology, Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA.ORCID https://orcid.org/0000-0002-2682-8127
Jacqueline G PerrigoueJanssen Research and Development, LLC, Spring House, PA, USA.ORCID https://orcid.org/0000-0001-5434-0316
Jennifer E TowneJanssen Research and Development, LLC, Spring House, PA, USA.ORCID https://orcid.org/0000-0002-7943-7453
Aviv RegevKlarman Cell Observatory, Broad Institute, Cambridge, MA, USA. dgraham@broadinstitute.org aregev@broadinstitute.org xavier@molbio.mgh.harvard.edu.ORCID https://orcid.org/0000-0003-3293-3158
Daniel B GrahamBroad Institute of MIT and Harvard, Cambridge, MA, USA. dgraham@broadinstitute.org aregev@broadinstitute.org xavier@molbio.mgh.harvard.edu.ORCID https://orcid.org/0000-0002-8403-8115
Ramnik J XavierBroad Institute of MIT and Harvard, Cambridge, MA, USA. dgraham@broadinstitute.org aregev@broadinstitute.org xavier@molbio.mgh.harvard.edu.ORCID https://orcid.org/0000-0002-5630-5167
Broad Institute · USHarvard University · USJanssen (United States) · US

Funding

RP5: Chemical proteomic discovery of small-molecule probes for autophagy proteinsU19AI142784 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI SHILOH, MICHAEL · 2019 to 2023
$36.9M
Pilot & Feasibility ProgramP30DK043351 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI RAYMOND T CHUNG · 1991 to 2026
$35.3M
Genetic and Pathway Analysis CoreU19AI109725 · NIAID · WASHINGTON UNIVERSITY · PI VIRGIN, HERBERT W · 2014 to 2018
$32.7M
Systematic dissection of gut cellular circuits [at single cell resolution]RC2DK114784 · NIDDK · BROAD INSTITUTE, INC. · PI ASHENBERG, ORR, GRAHAM, DANIEL BARTHOLOMEW · 2017 to 2021
$9.0M
ATG16L1 T300A: genetics to biologyR01DK097485 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI XAVIER, RAMNIK J · 2013 to 2021
$4.1M
NIAID NIH HHS U19 AI109725NIAID NIH HHS U19 AI142784NIDDK NIH HHS P30 DK043351NIDDK NIH HHS R01 DK097485NIDDK NIH HHS RC2 DK114784
6 · The paper itself

Abstract

Tissue homeostasis is perturbed in a diversity of inflammatory pathologies. These changes can elicit endoplasmic reticulum (ER) stress, protein misfolding, and cell death. ER stress triggers the unfolded protein response (UPR), which can promote recovery of ER proteostasis and cell survival or trigger programmed cell death. Here, we leveraged single-cell RNA sequencing to define dynamic transcriptional states associated with the adaptive versus terminal UPR in the mouse intestinal epithelium. We integrated these transcriptional programs with genome-scale CRISPR screening to dissect the UPR pathway functionally. We identified QRICH1 as a key effector of the PERK-eIF2α axis of the UPR. QRICH1 controlled a transcriptional program associated with translation and secretory networks that were specifically up-regulated in inflammatory pathologies. Thus, QRICH1 dictates cell fate in response to pathological ER stress.

Indexed as

Gene Expression RegulationAnimalsApoptosisCells, CulturedDNA-Binding ProteinseIF-2 KinaseEndoplasmic Reticulum StressEukaryotic Initiation Factor-2HumansInflammationIntestinal MucosaMiceOrganoidsProteostasisRNA-SeqSingle-Cell AnalysisDNA-Binding ProteinseIF-2 KinaseEukaryotic Initiation Factor-2QRICH1 protein, humanTranscription Factors

Identifiers

PMID33384352
PMCPMC8315080
OpenAlexW3114891200

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.