Evidence map›Paper›PMID 33383381›Full record

ArticleCytokine2021

RNA-Seq analysis reveals gene expression changes induced by IL-6 trans-signaling activation in retinal endothelial cells.

Rebekah Robinson, Daria Brown, Lara Churchwell, Tae-Jin Lee, Sai Karthik Kodeboyina, Justin Bloom, Ashok Sharma, Shruti Sharma

Open access · greenAbstract read
In one paragraph

Article in Cytokine, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.4field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Rebekah RobinsonCenter for Biotechnology & Genomic Medicine, Medical College of Georgia, Augusta University, Augusta, GA, USA.
Daria BrownCenter for Biotechnology & Genomic Medicine, Medical College of Georgia, Augusta University, Augusta, GA, USA.
Lara ChurchwellCenter for Biotechnology & Genomic Medicine, Medical College of Georgia, Augusta University, Augusta, GA, USA.
Tae-Jin LeeCenter for Biotechnology & Genomic Medicine, Medical College of Georgia, Augusta University, Augusta, GA, USA.
Sai Karthik KodeboyinaCenter for Biotechnology & Genomic Medicine, Medical College of Georgia, Augusta University, Augusta, GA, USA.
Justin BloomCenter for Biotechnology & Genomic Medicine, Medical College of Georgia, Augusta University, Augusta, GA, USA.
Ashok SharmaCenter for Biotechnology & Genomic Medicine, Medical College of Georgia, Augusta University, Augusta, GA, USA; Department of Ophthalmology, Medical College of Georgia, Augusta University, Augusta, GA, USA; Department of Population Health Sciences, Medical College of Georgia, Augusta University, Augusta, GA, USA; Culver Vision Discovery Institute, Medical College of Georgia, Augusta University, Augusta, GA, USA.
Shruti SharmaCenter for Biotechnology & Genomic Medicine, Medical College of Georgia, Augusta University, Augusta, GA, USA; Department of Ophthalmology, Medical College of Georgia, Augusta University, Augusta, GA, USA; Culver Vision Discovery Institute, Medical College of Georgia, Augusta University, Augusta, GA, USA. Electronic address: shsharma@augusta.edu.
Augusta University · US

Funding

Module 3: Gene Expression/ProteomicsP30EY031631 · NEI · AUGUSTA UNIVERSITY · PI Xingjun Fan · 2020 to 2026
$3.6M
Targeting Interleukin-6 Trans-signaling in Diabetic RetinopathyR01EY026936 · NEI · AUGUSTA UNIVERSITY · PI SHARMA, SHRUTI · 2016 to 2019
$1.5M
NEI NIH HHS P30 EY031631NEI NIH HHS R01 EY026936
6 · The paper itself

Abstract

backgroundIncreasing evidence suggests that interleukin-6 (IL-6) trans-signaling plays a critical role in the pathogenesis of diabetic retinopathy (DR). We have previously shown that activation of IL-6 trans-signaling induces barrier dysfunction in human retinal endothelial cells (HRECs). However, the molecular mechanisms underlying these effects are not clear. The purpose of this study was to discover global gene expression changes in HRECs following activation of IL-6 trans-signaling.

methodsHRECs were treated with IL-6 and soluble IL-6R to activate IL-6 trans-signaling, and sgp130Fc treatment was used for IL-6 trans-signaling inhibition. RNA-Seq analyses were performed for global gene expression profiling. Differential expression was determined using DESeq2, and bioinformatic analyses were performed to associate the differentially expressed genes with biological functions and pathways.

resultsOur analyses revealed 445 differentially expressed genes (318 upregulated and 127 downregulated) in HRECs after IL-6 trans-signaling activation. We identified several novel genes not previously associated with IL-6 signaling or endothelial dysfunction. Leukocyte adhesion, diapedesis and chemokine signaling pathways are highly enriched in differentially expressed genes. Inhibition of IL-6 trans-signaling with sgp130Fc abrogated these changes, thus highlighting the therapeutic potential of this drug.

conclusionsThis study identified significant gene expression changes caused by IL-6 trans-signaling activation in HRECs. Identification of such changes has the potential to uncover the precise molecular mechanisms of IL-6 trans-signaling mediated effects in the pathology of DR.

Indexed as

Cells, CulturedDown-RegulationEndothelial CellsGene ExpressionGene Expression ProfilingHumansInterleukin-6RetinaRNA-SeqSignal TransductionUp-RegulationIL6 protein, humanInterleukin-6Bioinformatic analysesEndothelial cellsGene expressionIL-6 trans-signalingRNA-Seqsgp130Fc

Identifiers

PMID33383381
PMCPMC7855525
OpenAlexW3115418976

What OpenQuestion holds

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LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.