Evidence map›Paper›PMID 33383062›Full record

ArticleJournal of immunological methods2021

Detection of engineered T cells in FFPE tissue by multiplex in situ hybridization and immunohistochemistry.

Jocelyn H Wright, Li-Ya Huang, Stephanie Weaver, L Diego Archila, Megan S McAfee, Alexandre V Hirayama, Aude G Chapuis, Marie Bleakley, Anthony Rongvaux, Cameron J Turtle and 3 more

Open access · greenAbstract read
In one paragraph

Article in Journal of immunological methods, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.2field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 5 citations in OpenAlex.

  1. Trial
  2. Finding Your CAR: The Road Ahead for Engineered T Cells.The American journal of pathology · 2024
    Review
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Jocelyn H WrightImmunopathology Lab, Clinical Research Division, Fred Hutchinson Cancer Research Center, United States of America. Electronic address: jhwright@fredhutch.org.
Li-Ya HuangExperimental Histopathology, Fred Hutchinson Cancer Research Center, United States of America.
Stephanie WeaverExperimental Histopathology, Fred Hutchinson Cancer Research Center, United States of America.
L Diego ArchilaProgram in Immunology, Clinical Research Division, Fred Hutchinson Cancer Research Center, United States of America.
Megan S McAfeeProgram in Immunology, Clinical Research Division, Fred Hutchinson Cancer Research Center, United States of America.
Alexandre V HirayamaProgram in Immunology, Clinical Research Division, Fred Hutchinson Cancer Research Center, United States of America.
Aude G ChapuisProgram in Immunology, Clinical Research Division, Fred Hutchinson Cancer Research Center, United States of America; Department of Medicine, University of Washington, United States of America.
Marie BleakleyProgram in Immunology, Clinical Research Division, Fred Hutchinson Cancer Research Center, United States of America; Department of Pediatrics, University of Washington School of Medicine, United States of America; Seattle Cancer Care Alliance, University of Washington, United States of America; Seattle Children's Hospital, University of Washington, United States of America.
Anthony RongvauxProgram in Immunology, Clinical Research Division, Fred Hutchinson Cancer Research Center, United States of America; Department of Immunology, University of Washington School of Medicine, United States of America.
Cameron J TurtleProgram in Immunology, Clinical Research Division, Fred Hutchinson Cancer Research Center, United States of America; Department of Medicine, University of Washington, United States of America; Seattle Cancer Care Alliance, University of Washington, United States of America.
R Savanh ChanthaphavongExperimental Histopathology, Fred Hutchinson Cancer Research Center, United States of America.
Jean S CampbellImmunopathology Lab, Clinical Research Division, Fred Hutchinson Cancer Research Center, United States of America; Department of Laboratory Medicine and Pathology, University of Washington, United States of America.
Robert H PierceImmunopathology Lab, Clinical Research Division, Fred Hutchinson Cancer Research Center, United States of America.
Fred Hutch Cancer Center · USUniversity of Washington · US

Funding

Translational Bioimaging Core Shared ResourceP30CA015704 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI Eric Collisson · 1985 to 2026
$296.4M
Understand & overcome resistance to PD-1P01CA225517 · NCI · UNIVERSITY OF WASHINGTON · PI PAUL NGHIEM · 2019 to 2026
$22.7M
NCI NIH HHS P01 CA225517NCI NIH HHS P30 CA015704
6 · The paper itself

Abstract

Identifying engineered T cells in situ is important to understand the location, persistence, and phenotype of these cells in patients after adoptive T cell therapy. While engineered cells are routinely characterized in fresh tissue or blood from patients by flow cytometry, it is difficult to distinguish them from endogenous cells in formalin-fixed, paraffin-embedded (FFPE) tissue biopsies. To overcome this limitation, we have developed a method for characterizing engineered T cells in fixed tissue using in situ hybridization (ISH) to the woodchuck hepatitis post-transcriptional regulatory element (WPRE) common in many lentiviral vectors used to transduce chimeric antigen receptor T (CAR-T) and T cell receptor T (TCR-T) cells, coupled with alternative permeabilization conditions that allows subsequent multiplex immunohistochemical (mIHC) staining within the same image. This new method provides the ability to mark the cells by ISH, and simultaneously stain for cell-associated proteins to immunophenotype CAR/TCR modified T cells within tumors, as well as assess potential roles of these cells in on-target/off-tumor toxicity in other tissue.

Indexed as

AnimalsBiopsyCell EngineeringCoculture TechniquesGenetic VectorsHepatitis B Virus, WoodchuckHumansImmunohistochemistryImmunophenotypingIn Situ Hybridization, FluorescenceLentivirusLymph NodesMaleMiceMice, TransgenicModels, AnimalReceptors, Chimeric AntigenCAR-TImmunohistochemistryImmunophenotypingin situ hybridizationTCR-TWPRE

Identifiers

PMID33383062
PMCPMC7979489
OpenAlexW3114475755

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.