Evidence map›Paper›PMID 33380895›Full record

ArticleBiochemia medica2021

Pre-amplification as a method for improvement of quantitative RT-PCR analysis of circulating miRNAs.

Ankica Sekovanić, Adrijana Dorotić, Jasna Jurasović, Daria Pašalić, Jelena Kovačić, Sandra Stasenko, Tatjana Mioč, Martina Piasek, Tatjana Orct

Open access · diamondAbstract read
In one paragraph

Article in Biochemia medica, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.3field-weighted citation impact, top 48% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Ankica SekovanićInstitute for Medical Research and Occupational Health, Zagreb, Croatia.
Adrijana DorotićDepartment of Medical Laboratory Diagnostics, Sveti Duh University Hospital, Zagreb, Croatia.
Jasna JurasovićInstitute for Medical Research and Occupational Health, Zagreb, Croatia.
Daria PašalićDepartment of Medical Chemistry, Biochemistry and Clinical Chemistry, University of Zagreb, School of Medicine, Zagreb, Croatia.
Jelena KovačićInstitute for Medical Research and Occupational Health, Zagreb, Croatia.
Sandra StasenkoDepartment of Gynecology and Obstetrics, Merkur University Hospital, Zagreb, Croatia.
Tatjana MiočDepartment of Gynecology and Obstetrics, Merkur University Hospital, Zagreb, Croatia.
Martina PiasekInstitute for Medical Research and Occupational Health, Zagreb, Croatia.
Tatjana OrctInstitute for Medical Research and Occupational Health, Zagreb, Croatia.
Institute for Medical Research and Occupational Health · HRKlinička bolnica Merkur · HRUniversity of Zagreb · HR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

introductionThe assessment of circulating miRNAs is challenging and still limited due to their low concentrations, small size and lack of reference values in human biological samples. Pre-amplification of complementary DNAs may facilitate reliable miRNA quantification. The aim of our study was to evaluate the efficacy of pre-amplification as a step to increase the sensitivity of qPCR analysis for five candidate circulating miRNAs presumably related to toxic metals and cigarette smoke exposure: miR-1537, miR-190b, miR-16, miR-21, and miR-146a. MATERIALS AND

methodsCandidate miRNAs expression was analysed in plasma samples of 19 mother-newborn pairs. For isolation, transcription, pre-amplification and qPCR quantification kits and protocols by Qiagen (Hilden, Germany) were used. Paired t-test or Wilcoxon rank test were used to compare miRNAs expression levels with and without a pre-amplification step prior to qPCR, separately in maternal and cord plasma. Intraclass correlation (ICC) was calculated as an agreement measure between procedures for each miRNA.

resultsPre-amplification facilitated the detection of all assayed miRNAs with an overall cycle threshold (C

conclusionPre-amplification is a useful, necessary step in the analysis of miR-1537 and miR-190b as a reliable procedure facilitating extracellular miRNA expression detection in human plasma by real-time PCR quantification.

Indexed as

Real-Time Polymerase Chain ReactionReverse Transcriptase Polymerase Chain ReactionCirculating MicroRNACross-Sectional StudiesFemaleFetal BloodHumansMaleCirculating MicroRNAblood plasmacirculating microRNAsepigeneticspre-amplificationRT-PCR

Identifiers

PMID33380895
PMCPMC7745165
OpenAlexW3114665130

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.