Evidence map›Paper›PMID 33377317›Full record

ArticleMicrobiologyOpen2021

Isolation and characterization of fast-growing green snow bacteria from coastal East Antarctica.

Margarita Smirnova, Uladzislau Miamin, Achim Kohler, Leonid Valentovich, Artur Akhremchuk, Anastasiya Sidarenka, Andrey Dolgikh, Volha Shapaval

Open access · goldAbstract read
In one paragraph

Article in MicrobiologyOpen, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.9field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Frontiers in bioengineering and biotechnology · 2023
    Review
  11. Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Margarita SmirnovaFaculty of Science and Technology, Norwegian University of Life Sciences, Ås, Norway.ORCID 0000-0001-8644-8217
Uladzislau MiaminFaculty of Biology, Belarusian State University, Minsk, Belarus.
Achim KohlerFaculty of Science and Technology, Norwegian University of Life Sciences, Ås, Norway.
Leonid ValentovichFaculty of Biology, Belarusian State University, Minsk, Belarus.
Artur AkhremchukInstitute of Microbiology, National Academy of Sciences of Belarus, Minsk, Belarus.
Anastasiya SidarenkaFaculty of Biology, Belarusian State University, Minsk, Belarus.
Andrey DolgikhInstitute of Geography, Russian Academy of Sciences, Moscow, Russia.
Volha ShapavalFaculty of Science and Technology, Norwegian University of Life Sciences, Ås, Norway.
National Academy of Sciences of Belarus · BYNorwegian University of Life Sciences · NOBelarusian State University · BYInstitute of Geography · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Snow microorganisms play a significant role in climate change and affecting the snow melting rate in the Arctic and Antarctic regions. While research on algae inhabiting green and red snow has been performed extensively, bacteria dwelling in this biotope have been studied to a much lesser extent. In this study, we performed 16S rRNA gene amplicon sequencing of two green snow samples collected from the coastal area of the eastern part of Antarctica and conducted genotypic and phenotypic profiling of 45 fast-growing bacteria isolated from these samples. 16S rRNA gene amplicon sequencing of two green snow samples showed that bacteria inhabiting these samples are mostly represented by families Burkholderiaceae (46.31%), Flavobacteriaceae (22.98%), and Pseudomonadaceae (17.66%). Identification of 45 fast-growing bacteria isolated from green snow was performed using 16S rRNA gene sequencing. We demonstrated that they belong to the phyla Actinobacteria and Proteobacteria, and are represented by the genera Arthrobacter, Cryobacterium, Leifsonia, Salinibacterium, Paeniglutamicibacter, Rhodococcus, Polaromonas, Pseudomonas, and Psychrobacter. Nearly all bacterial isolates exhibited various growth temperatures from 4°C to 25°C, and some isolates were characterized by a high level of enzymatic activity. Phenotyping using Fourier transform infrared (FTIR) spectroscopy revealed a possible accumulation of intracellular polymer polyhydroxyalkanoates (PHA) or lipids in some isolates. The bacteria showed different lipids/PHA and protein profiles. It was shown that lipid/PHA and protein spectral regions are the most discriminative for differentiating the isolates.

Indexed as

Antarctic RegionsBacteriaClimate ChangeDNA, BacterialEcosystemFourier AnalysisGenotypeMicrobiotaPhylogenyRNA, Ribosomal, 16SSequence Analysis, DNASnowDNA, BacterialRNA, Ribosomal, 16S16S rRNA gene amplicon sequencing16S rRNA gene sequencingAntarctic bacteriaFourier transform infrared (FTIR) spectroscopygreen snowprincipal component analysis

Identifiers

PMID33377317
PMCPMC7887010
OpenAlexW3113425074

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.