Evidence map›Paper›PMID 33375043›Full record

ArticleCancers2020

piNET-An Automated Proliferation Index Calculator Framework for Ki67 Breast Cancer Images.

Rokshana Stephny Geread, Abishika Sivanandarajah, Emily Rita Brouwer, Geoffrey A Wood, Dimitrios Androutsos, Hala Faragalla, April Khademi

Abstract read
In one paragraph

Article in Cancers, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Unsupervised domain adaptive tumor region recognition for Ki67 automated assisted quantification.International journal of computer assisted radiology and surgery · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Rokshana Stephny GereadElectrical, Computer and Biomedical Engineering Department, Ryerson University, Toronto, ON M5B 2K3, Canada.ORCID 0000-0002-8583-5829
Abishika SivanandarajahElectrical, Computer and Biomedical Engineering Department, Ryerson University, Toronto, ON M5B 2K3, Canada.ORCID 0000-0002-7896-2547
Emily Rita BrouwerDepartment of Pathobiology, Ontario Veterinarian College, University of Guelph, Guelph, ON NIG 2W1, Canada.
Geoffrey A WoodDepartment of Pathobiology, Ontario Veterinarian College, University of Guelph, Guelph, ON NIG 2W1, Canada.ORCID 0000-0003-1756-8607
Dimitrios AndroutsosElectrical, Computer and Biomedical Engineering Department, Ryerson University, Toronto, ON M5B 2K3, Canada.
Hala FaragallaDepartment of Laboratory Medicine & Pathobiology, St. Michael's Hospital, Unity Health Network, Toronto, ON M5B 1W8, Canada.
April KhademiElectrical, Computer and Biomedical Engineering Department, Ryerson University, Toronto, ON M5B 2K3, Canada.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In this work, a novel proliferation index (PI) calculator for Ki67 images called piNET is proposed. It is successfully tested on four datasets, from three scanners comprised of patches, tissue microarrays (TMAs) and whole slide images (WSI), representing a diverse multi-centre dataset for evaluating Ki67 quantification. Compared to state-of-the-art methods, piNET consistently performs the best over all datasets with an average PI difference of 5.603%, PI accuracy rate of 86% and correlation coefficient R = 0.927. The success of the system can be attributed to several innovations. Firstly, this tool is built based on deep learning, which can adapt to wide variability of medical images-and it was posed as a detection problem to mimic pathologists' workflow which improves accuracy and efficiency. Secondly, the system is trained purely on tumor cells, which reduces false positives from non-tumor cells without needing the usual pre-requisite tumor segmentation step for Ki67 quantification. Thirdly, the concept of learning background regions through weak supervision is introduced, by providing the system with ideal and non-ideal (artifact) patches that further reduces false positives. Lastly, a novel hotspot analysis is proposed to allow automated methods to score patches from WSI that contain "significant" activity.

Indexed as

breast cancerdeep learningdigital pathologyhematoxylinKi67proliferation index

Identifiers

PMID33375043
PMCPMC7792768

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.